Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2003 ATGGCAACTATGCTGGCAAAGGATCTGAACCTCAAGGAGACTGAGCTTTGCCTCGGTCTGCCTGGTGGAGGAGGTGGCGGCGGTGGTGTCTCTGAGGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCAGCCTAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCAGCTCCTTAAGGATCCTGCCAAGCCACCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAGAAAGTTAGCAGTGAGGAAGTAGCTGAGAAAACAACAAGCAGCAATAATGGAAATTCTGCAGGGGCATTTGTGAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTTGACCTCACAATGTACAAAAGCTACAAAGACTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTAAACAGCTCTGAGTATGTGCCAAGCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCTATTGGGCTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 729 0.4787 MATMLAKDLNLKETELCLGLPGGGGGGGGVSEVETPRATGKRGFSETVDLKLNLQPKEDLNENLKNVSKEKTQLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVSSEEVAEKTTSSNNGNSAGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2003 242 Coils Coil 57 77 - -
Aed8g2003 242 ProSiteProfiles PB1 domain profile. 124 224 IPR000270 GO:0005515
Aed8g2003 242 Pfam AUX/IAA family 38 233 IPR033389 -
Aed8g2003 242 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 235 IPR003311 GO:0005634|GO:0006355
Aed8g2003 242 SUPERFAMILY CAD & PB1 domains 116 223 - -
Aed8g2003 242 Gene3D - 118 236 - -
Aed8g2003 242 MobiDBLite consensus disorder prediction 20 44 - -
Aed8g2003 242 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 6 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2003 Aed-Chr8 24508360 24510721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2003 104 232 B3 DNA Binding Superfamily AT4G23980 30.370 4.28e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed8g2003 AUX_IAA 5.2e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2003 K14484 - gmx:100810762 403.675