Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2002 ATGGAAAGCACTGTGACATATGAGACTGCTGATCTAAACCTCAAGGCAACAGAACTTAGATTGGGGCTACCAGGAACAGAAGAAGAAAGTACTGAGGAAAAAACACTGCCTACTGCAGCTGCTAGAGTTACCAACAAAAGGCCTTTGACTACTGAAACCTCTTCTGATCAGGAGTGTGTTTCAAAGGGCTCTAGTGCCCTACATGTGGAAACTGATGCACCCCCTCCTGCCAAGGCTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTTCAGGAGAATGAGGGTGCTGGGATTTATGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGACTTGAAGGTCTATGGAGGCTACAAACAGCTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTATTCTGAAAAAGAAGGTTATAAGGGATCTGACTTTGCACCTACATATGAAGACAAAGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTGAGAATCATGAAAGGATCAGAGGCCAGGGGTTTGGGTTGTGCTGTATGA 600 0.4533 MESTVTYETADLNLKATELRLGLPGTEEESTEEKTLPTAAARVTNKRPLTTETSSDQECVSKGSSALHVETDAPPPAKAKIVGWPPIRSYRKNSLQENEGAGIYVKVSMDGAPYLRKIDLKVYGGYKQLLKALENMFKLTIGEYSEKEGYKGSDFAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCAV 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2002 199 MobiDBLite consensus disorder prediction 21 60 - -
Aed8g2002 199 MobiDBLite consensus disorder prediction 44 60 - -
Aed8g2002 199 Pfam AUX/IAA family 17 196 IPR033389 -
Aed8g2002 199 SUPERFAMILY CAD & PB1 domains 92 188 - -
Aed8g2002 199 Gene3D - 96 199 - -
Aed8g2002 199 ProSiteProfiles PB1 domain profile. 102 189 IPR000270 GO:0005515
Aed8g2002 199 PANTHER AUXIN-INDUCED PROTEIN 11 196 - -
Aed8g2002 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 196 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2002 Aed-Chr8 24486190 24488648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2002 105 195 B3 DNA Binding Superfamily AT2G46530 37.363 1.08e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aed8g2002 AUX_IAA 1.4e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2002 K14484 - gmx:100527777 320.472