Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1997 ATGGCAGCAGGGTTGGAACTCATTCCCATAGGTACAATTTTGACAGTGGTAACTAACCAAGTATTGAAAACAGCTCATGCAGCATCCGATGTTCTTATTGGTAAAGAAAGTTTCAAATCCCTTTCAAAACATCTATTCAACATTGAGCCAGTGCTAAAAGAATTGGAGCTTCAAGAATTGAATGACTCTCAGGCCGCAAGGGTTGCTCTAGAGTCTCTTGAAGCAGATGTTAAGAAGGCAAATAATTTGGTTGAGAAGTACAAGAACCGTGGCCGCTTTTACTTACTCATTAAGTGTCGATCCATCGTTGAGGAGGTTGAAAAAGTAACAAGGGATATTGGAAAGTCTCTGGCTGCATTGTCTATTGCAAACACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAATAGACTTCAAAATGAGATGCAAAGGGTGGAATTTGAGGCTTCACAGTCTCAGATTCAAATTGTTGACAGGTTGAACCAGGGACTTAGAGAGCAGAAGCTAGATCAGGCTTTTGCAAATGACATATTGGAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAGGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAAGCTTCCATCCGGAAAGAAAGAGCTGAATGTGTTCTTTTGGACCAGATCATTCAGTTACTCTCTCGAGCCGATGCAGCAAGGGATTATGAAGAAGTGGAGAGGCATTACTTTGAAAGGGTTAAGGTGATAGAGAGATATGATTCAAGGGAAAAGCATATCCCTCCACTCAATTCTTTTGTTTGTTCTATAACTCGAGCTGTTATGGCGGATCCTGTTAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCTATTGAAGCTTGGTTTTATGATGGCAACAGGACAGACCCAGAAACTAAAGAGGTTCTTGAAGATACTACATTGAGGTCTAACATTCCACTAAGACAGTCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTGGTAATAAGGTCTATCAGGGAAAATTTGTTATCATATTCTGAGCTGCAAGAATCCCTTAGCCAAATGCAGGCCCTAGTAAGAGAGAACTCAATTAACAAGGATTGGATTTCTATAGCAGAGCTTACTGACATTGTTATCTCTATCCTTGGGAGCTCTGATGACAGAGAAGTGAAGATGAAGATTTTGATAACTTTGAAGGATGCTGTAGAGGGGAATGCAAGAAACAAGGAGAAAGTGGCTCAATCTCAAGGATGGGATCACATTATTTCTTGCTTAGGGAGTGACTCTAGAAGTTCAAAGGCAGCTATTGATTTGCTATATGAGTTGCTTCAAGAACAGTCCGGGTGGAATCAATTCCTCTGCAGAAAGCTTTCTGAAAATCACACTGCAGTTCGGTCCCTTGTCACCCTTCTGAAGAATCATGTCAACCATTCTGCTGAGGTTGCGGAAAAGATTTTGATGAAGCTTTTTGAACTAAATGAAGAAACCATTACTATTGCTGCTAACTTTGGGTGGTATAAACCACTTGTTGATCTCATGATTCAAGGATCAGATTCAAGAATATCAATGACAAAAGCCATAGTTAATTTGGAATTGAGTGATTCAAACTTAAAACTCCTTGGCAAGGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGTCAGGTAATATTGAATCAAGAGACTTGTCATTGTCAGCCCTGGCTAAATTAGCAGGATCTCATGCCAACAAGGGAATTATTGCTGCAACTGGAGGAGTACCTCTTATTATAGATTTAATGTTCTCTCCTAGGTCACGGACACTCATCATCATTAAATGTTCTGAAATCATTGAGAAGCTTTCTTCAGATGGCAATGGAATAGATTTCTTCGTTGATGGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAATTTGCTAGCTTTGCAGAAGAACTCCAACTCAGGTCACAACATCCGCAAGCCTGCACTGCGTGCACTTCTTGGCATTTGCAAGTTTGAGACCGGTTTGGTAAAGAAAGCAATTCTTGCAGCCAACGGTGTATCTCTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAACCAGGGAGACTTCCATAATTCTGCTCTTTATTTTCTCCCAACACGAGCCGGAAGGAGTGGTCGAATACCTCTTCAGGCCTAGAAGGCTAGAAGCCTTGATTGGATTTCTTGAGAACGAAGAAAACGACAATGTGCAGATAGCTGCTGCTGGTTTACTGGCCAACCTGCCAAAATCAGAACGAGAACTCACTATGAAGTTGATTGAGTTAGGTGGACTTGATGCAATCATAAGCATTTTAGAAACTGGGAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACTGATATCGAGTCACAGCGCGATTTGGTTAAGCGCGGAATATACCCTTTGCTTGTAGGTTTCCTCAAGACTGGTTCAATCACTGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGTTGTTCCAAAACCAACCGGTTGCTGGCTTTTCAGATCAGCACGTGTTCCTTTGTGTGCAGCACATGGTAGTGTATGCAGTGTGAACACCACATTTTGCCTCTTGGAAGCAAAGGCTCTACTTGGCTTGATAGAGCTGTTGCATGGAGAGGTTCATGCAACTGCTTATGAAGCAATACAGACACTTTCCACATTGGTTTTGGAAGATTTTCCTCAAAGGGGTGCTCGTGTCTTGCATGACTATAATGCAATAAGATCCATATTGGACATTCTGAATTGGGGAACTGAATCTCTAAAAGCAGAAGCTCTAGGACTGTTGGAGAAGGTGTTTGTGTCAAGGGACATGGTGGAGCACTATGGAACAACAGCTAGATCACGTCTAATTGGTCTCACTGGGATGAATATATATGGGGATGGACACCTTAGGAGAAAAGCTGCCAAAGTACTATCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCAATCTCTGGAGTTCTTGAGTGA 3045 0.4197 MAAGLELIPIGTILTVVTNQVLKTAHAASDVLIGKESFKSLSKHLFNIEPVLKELELQELNDSQAARVALESLEADVKKANNLVEKYKNRGRFYLLIKCRSIVEEVEKVTRDIGKSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQIQIVDRLNQGLREQKLDQAFANDILEEIARAVGVPVEPSEISKELASIRKEKEEASIRKERAECVLLDQIIQLLSRADAARDYEEVERHYFERVKVIERYDSREKHIPPLNSFVCSITRAVMADPVSLCTGTTCERSAIEAWFYDGNRTDPETKEVLEDTTLRSNIPLRQSIEEWRELNYCLVIRSIRENLLSYSELQESLSQMQALVRENSINKDWISIAELTDIVISILGSSDDREVKMKILITLKDAVEGNARNKEKVAQSQGWDHIISCLGSDSRSSKAAIDLLYELLQEQSGWNQFLCRKLSENHTAVRSLVTLLKNHVNHSAEVAEKILMKLFELNEETITIAANFGWYKPLVDLMIQGSDSRISMTKAIVNLELSDSNLKLLGKEGVIPPLLEMLSGNIESRDLSLSALAKLAGSHANKGIIAATGGVPLIIDLMFSPRSRTLIIIKCSEIIEKLSSDGNGIDFFVDGEGKQLELDSIITNLLALQKNSNSGHNIRKPALRALLGICKFETGLVKKAILAANGVSLILPLLDDSDSETRETSIILLFIFSQHEPEGVVEYLFRPRRLEALIGFLENEENDNVQIAAAGLLANLPKSERELTMKLIELGGLDAIISILETGKMEAKENALSALFRFTDPTDIESQRDLVKRGIYPLLVGFLKTGSITAKARAAAFIGDLSMSTPKLTVVPKPTGCWLFRSARVPLCAAHGSVCSVNTTFCLLEAKALLGLIELLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHDYNAIRSILDILNWGTESLKAEALGLLEKVFVSRDMVEHYGTTARSRLIGLTGMNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1997 1014 Coils Coil 198 218 - -
Aed8g1997 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 335 IPR013083 -
Aed8g1997 1014 Pfam U-box domain 265 330 IPR003613 GO:0004842|GO:0016567
Aed8g1997 1014 Gene3D - 9 125 IPR036537 GO:0007166
Aed8g1997 1014 Coils Coil 63 90 - -
Aed8g1997 1014 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1011 - -
Aed8g1997 1014 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Aed8g1997 1014 SUPERFAMILY RING/U-box 250 331 - -
Aed8g1997 1014 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1011 - -
Aed8g1997 1014 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Aed8g1997 1014 SMART arm_5 575 617 IPR000225 GO:0005515
Aed8g1997 1014 SMART arm_5 671 711 IPR000225 GO:0005515
Aed8g1997 1014 SMART arm_5 713 755 IPR000225 GO:0005515
Aed8g1997 1014 SMART arm_5 407 446 IPR000225 GO:0005515
Aed8g1997 1014 SMART arm_5 757 797 IPR000225 GO:0005515
Aed8g1997 1014 SMART arm_5 535 574 IPR000225 GO:0005515
Aed8g1997 1014 Coils Coil 128 155 - -
Aed8g1997 1014 SUPERFAMILY ARM repeat 457 956 IPR016024 -
Aed8g1997 1014 Gene3D - 631 1009 IPR011989 -
Aed8g1997 1014 Gene3D - 348 630 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1997 Aed-Chr8 24427988 24432288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1997 265 969 U-box Gene Family AT1G76390 28.553 2.01e-44 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1997 - - gmx:100783638 1771.13