Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1976 ATGGCTTCCCTGGCGGCTTCCACGGCGGCTATGTCGTCAGAAATGCTTGGAAACCCCGTGAGTCTGAGAGGCGCCACCTGCAGGTCTGCTCCTCCATCGGCATCTACACCTGCCACCAGCTTCAAGACCGTTGCTCTTTTCTCCAAGAAGAAGGCTGCTCCAAAGAAAAAGCCTGCTGCTGCTTCTCCCGCCAATGAGGAACTCGCCAAGTGGTATGGTCCTGATAGAAGGATCTTCTTGCCTGATGGTCTCCTGGACCGATCAGAGATCCCCGAGTACTTGACCGGAGAAGTGCCTGGAGATTATGGTTATGACCCGTTTGGTCTTAGCAAGAAGCCAGAGGACTTCGCCAAATACCAGGCGTTTGAGTTGATTCATGGCAGATGGGCAATGCTGGGTGCTGCTGGATTCATCATTCCTGAGGCCTTTAACAAATACGGAGCTAACTGTGGCCCTGAGGCTGTTTGGTTCAAGACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCTATCCCCATCAATCTTATTTTAGCTGTTATTGCTGAGATTGTTCTTTTGGGTGGTGCTGAGTACTACAGAATCACTAATGGCCTGGATTTCGAAGACAAGCTTCATCCAGGTGGGCCATTCGACCCATTGGACCTGGCAAAGGATCCAGACCAAGCTGCACTTCTAAAGGTGAAGGAAATTAAGAATGGTAGACTTGCTATGTTTGCAATGCTTGGTTTCTACTTCCAAGCCTATGTGACTGGAGAAGGCCCAGTTGAGAACTTGGCTAAACATCTTAGTGACCCTTTTGGTAACAACTTGCTCACTGTCATTGCTGGCTCTGCTGAGAGGGTTCCAACTCTGTAA 870 0.4989 MASLAASTAAMSSEMLGNPVSLRGATCRSAPPSASTPATSFKTVALFSKKKAAPKKKPAAASPANEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHGRWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVIAEIVLLGGAEYYRITNGLDFEDKLHPGGPFDPLDLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERVPTL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1976 289 Pfam Chlorophyll A-B binding protein 91 252 IPR022796 -
Aed8g1976 289 Gene3D Chlorophyll a/b binding protein domain 78 289 - -
Aed8g1976 289 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 289 IPR001344 GO:0009765|GO:0016020
Aed8g1976 289 SUPERFAMILY Chlorophyll a-b binding protein 71 280 - -
Aed8g1976 289 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1976 Aed-Chr8 24271324 24273633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1976 1 289 Chloroplast and Mitochondria Gene Families AT4G10340 83.045 1.47e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1976 K08916 - gmx:100817348 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1976 8 24271324 24273633 Aed8g1976 8 24271324 24273633 ECH
Aed7g0466 7 3319935 3322377 Aed8g1976 8 24271324 24273633 PCT