Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1964 ATGGTTGTGAGCGGAGGGAAGGGCCTGAAACGCGCTGCGAAGAAGAGAGTCACCGCTGACTTCTACGACTTCCTCACGTTCCCCACGCCGGCCCTCGCCGAGGCGGAGAACTTCGCCGGCGGACCGTTCCGCTCCAACGTGCGTTCCTTCCTGACGAAGCACGCGCTGCTCCCGCCACCATCCGCGCTCTTCCCGCACCTGCTGACGTGGCAGATCGTCTTCCGCGTCGGCGAGCTCACCGAGGGCCCCGACGCGCCGGCGGTGTGCCTCGACGTCGTGGAGGAGGACGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTTGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCCGATGGGAGCTCCATTGGTGGGTACCACAAACCATGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAATGCAAGTCATGCAATCATGTGACTACCACGGATGATGTTGAAGACTGGGTGTATCACCAATTAGAGAACACGACTCATCTTTTACATGGTGTAGTCCATGCCAATGGATATGGACACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTATTCATATCATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTTAGTGTGATGGATGTTTCAAAAAAATATGGGTTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACATCCATGGTATGGCGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCACCTTTTTCCAGGGACAGATGTCCAACTCTCGTGTGCAGGACATGATCAAATATTATCAATCTTTGTCAGAGCACAAGCTTGTAAATATAAGGGACCTCTTTTGTTTCATATTGGGTTTAATAGGTGATGCTCGCAAGACGGCATCAAATGTTGATGAGACAACATGCAAGAAGCGTCGTTTTGATGCTTCTGGACTGTCAATTTCTTGGGATAAGAGTGACATTGAACGTGTGGAGCAAGCCATGATCAGAGTGCTGCGTGCAGTGTCTGAGTCTAAGTGGGTGAGCTGGCGTGCTCTTAGGGGTGCAGCCTCCAAGTTGGGCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCAATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTCGAGGCTGCAACTGGTGCTTGTTATGGAATTTTAGCGAACAACAACTTGTCAGGCTCAAAGTATCCATCTGAAGAAAACCTCCTACAATGCTTGAGATATTTATACGATTCTTTGCTTCATCCTCAGATGATGGTAAACTATGAAGCAGGGACAAGGACTCTTGCAATGAGCTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAGTCCTGAGATGTTGCCATTGTCAGATTTGCAGAAGTTTCACATCTCATGTCACGTTGAACTTGTAGACGAACCTGAAGATTCAGAAGCTATAACTCCACCAGAATTAGTTGTGCTCCCCCTGAATACCACGGTGGCTGAGCTTAAGAATCAAGTGGCAAATGCTTTCCAAGATGTGTATCTAATGTTCAGAAGGCTTCAAGTTGACGAGCTACATGGCTATAGCGGTGTCGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAGAGATGTAGTTTGTGTCCGAGGTAGATGCATAGGAAAGAACGGGTTGAGCAAGTTCCGAATGGAACGGGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGAGCGAAGGATGATGATGGGGAGAGAATGTTGGCGTGTGATTTATGCGGAGTGTGGCGACACACTAGGTGTTCTGACATCCATGATACTGATCCTGTTCCAGCACGTTTTGTTTGCCTGAAATGCCAAAGCTGTGAATCAAAACTCAAATCTAGTGGGCACTGCAAAGATGAGACTGTGACTAACGTTAGTACTAGTAGTTGCTTCAGAAACGGCTTGCCACTGCCATCTGATGTTATTTGA 2124 0.4802 MVVSGGKGLKRAAKKRVTADFYDFLTFPTPALAEAENFAGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQIVFRVGELTEGPDAPAVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGIHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTHEAYKSAVESLSNLPLSTFFQGQMSNSRVQDMIKYYQSLSEHKLVNIRDLFCFILGLIGDARKTASNVDETTCKKRRFDASGLSISWDKSDIERVEQAMIRVLRAVSESKWVSWRALRGAASKLGSPELLDYCLGELGGKMVYGGMVVNSQCNPQTGVYEFRLEAATGACYGILANNNLSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYEAGTRTLAMSSAQKLFDCKQFVKDYSPEMLPLSDLQKFHISCHVELVDEPEDSEAITPPELVVLPLNTTVAELKNQVANAFQDVYLMFRRLQVDELHGYSGVDDSTQVKLLLGSRDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDLCGVWRHTRCSDIHDTDPVPARFVCLKCQSCESKLKSSGHCKDETVTNVSTSSCFRNGLPLPSDVI 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1964 707 PANTHER OS01G0877500 PROTEIN 1 681 - -
Aed8g1964 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 681 - -
Aed8g1964 707 CDD PHD_MMD1_like 624 669 - -
Aed8g1964 707 Pfam PHD-finger 625 672 IPR019787 -
Aed8g1964 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 675 IPR013083 -
Aed8g1964 707 SUPERFAMILY FYVE/PHD zinc finger 613 670 IPR011011 -
Aed8g1964 707 ProSitePatterns Uncharacterized protein family UPF0054 signature. 183 193 IPR020549 -
Aed8g1964 707 SMART PHD_3 624 670 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1964 Aed-Chr8 24168771 24174852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1964 78 676 PHD Transcription Factor Family AT5G22260 30.265 2.80e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed8g1964 PHD 4.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1964 - - gmx:100818189 1399.42