Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1962 ATGAGGGCATTCAAGCGTTGGATGAAGTCGAAGGGGTTCGAATGGAGCGATGCAATCGACTTTGTGGACACCCCAGAAGAGGGTGTAGCTGTGAGAGCATTGTGGCAATTGAAGGAAGGTGATGTTGTGGCCAAGATGCCAAAGGAAGCTTGTCTCACCACAATGACCAGTGGGGCACGTGAGATAATTGAAGAGGCTGGTTTGGATGGTCATTTGGGGCTAGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGAGGACTCCCCCTGGGCTGGTTACCTTCAAGTCTTGCCTTTCCAAGAGTGTGTGCCAATTGTTTGGACCCTCGATGAAGTAAACGAGCTTTTGTGTGGTACTGAGCTTCACCAGACAGTGCAAGAAGACAAGGCTCTGATTTATGAGGACTGGAAAGAGAATGTTCTCCCCATATTGGATTTAGCACCTTCAAAACTAAATCCAAAGTTCTTTGGCATAGAACAATACTTTGCAGCAAAAAGTCTTATATCTTCACGATCTTTTGAGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTATTCAATCACAAAACAGGTGCAGAGGATGTGCATTTCACTGCTATGCCCTCTAATTATGAATCTGATACTGATGTTGATGGTGGTAGCGATGATGAGGGCATTGTTGTGAAAGAAGCATCACCTCAAAATTCCTCTACAGATATGACTGCGTTAAATACTGCTAATAATGGGAACTGCAATGGTAGTGATTTGGATAGTTCTTCAGTTAGTGAGGGTGATACTTCTATGCTAGAGATGATTATGATAAAAGATGTCAACAGTGGAACTGAGGTATTTAATACTTATGGGCTATTGGGTAATGCTGCTTTGCTTCATAGATATGGATTTACCGAGCACGATAATTCCTATGATATTGTAAACATAGATATGGAACTGGTACTTCAATGGTGTACTTCAGTGTTTTCTGACCGCCACAGTAGAGCAAGAGTCTCCCTCTGGAGAAGGTTAGACTGCTCTGGATGTGACAGCCAAAACTTGGAATATTTTGAGATCTCATTTGATGGAGAACCGCAGACTGAACTCCTCACTTTATTACACATCATGTTATTATCAGATAATGCCTACCATAAGTTAGACCTATCAGTATCAGTTGCTGGAAATTGTGATGATTCAAGTGGAACCACTCTTCTGAATGGTAATATCTTTTCTGGTAAAGCATTTAATATGAGCAAGAAATCATTGCTGCCTAAGAAAGTTTGTGATGCCCTGTTGTCACTTGCTGATATGAGGGAGAGTCTCTATGGTTTGAAATCAATTGAAGATGATATGAAGGCATTGGGAAGGTGTAGTTTAGTTAGAGAGAGAAAGCTGTATCATTCTTTGGTGCTGCGCATCAATGAAAGGAAGATCCTTCAGAGGCTCAGAAATTATGCTTCACGGCCATCTAAAAACAAAATCACTAACCATAGTTCTCCAAGGAAGAAGTTGAAATGGACAACAAAGAAAACGAGTTGA 1521 0.4155 MRAFKRWMKSKGFEWSDAIDFVDTPEEGVAVRALWQLKEGDVVAKMPKEACLTTMTSGAREIIEEAGLDGHLGLAFAIMYERSLGEDSPWAGYLQVLPFQECVPIVWTLDEVNELLCGTELHQTVQEDKALIYEDWKENVLPILDLAPSKLNPKFFGIEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTAMPSNYESDTDVDGGSDDEGIVVKEASPQNSSTDMTALNTANNGNCNGSDLDSSSVSEGDTSMLEMIMIKDVNSGTEVFNTYGLLGNAALLHRYGFTEHDNSYDIVNIDMELVLQWCTSVFSDRHSRARVSLWRRLDCSGCDSQNLEYFEISFDGEPQTELLTLLHIMLLSDNAYHKLDLSVSVAGNCDDSSGTTLLNGNIFSGKAFNMSKKSLLPKKVCDALLSLADMRESLYGLKSIEDDMKALGRCSLVRERKLYHSLVLRINERKILQRLRNYASRPSKNKITNHSSPRKKLKWTTKKTS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1962 506 PANTHER RIBOSOMAL LYSINE N-METHYLTRANSFERASE 3 6 490 - -
Aed8g1962 506 SUPERFAMILY SET domain 1 304 IPR046341 -
Aed8g1962 506 CDD SET_LSMT 18 299 - -
Aed8g1962 506 ProSiteProfiles SET domain profile. 17 285 IPR001214 GO:0005515
Aed8g1962 506 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 490 - -
Aed8g1962 506 MobiDBLite consensus disorder prediction 483 506 - -
Aed8g1962 506 Gene3D set domain protein methyltransferase, domain 1 1 298 - -
Aed8g1962 506 Gene3D - 301 480 IPR036464 -
Aed8g1962 506 MobiDBLite consensus disorder prediction 228 259 - -
Aed8g1962 506 Pfam SET domain 28 285 IPR001214 GO:0005515
Aed8g1962 506 MobiDBLite consensus disorder prediction 489 506 - -
Aed8g1962 506 PIRSF RMS1_SET 1 484 IPR011383 GO:0016279|GO:0018026
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1962 1 505 NAC Transcription Factor Family AT3G56570 53.107 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed8g1962 SET 5.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1962 K05302 - gmx:100794971 879.011