Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1948 ATGGCAACTCGAAGATATGAGTTTGGAAGGATGAATGAGGCTAGCCACCCTGACTCCATGAGAGCTGCCTTGGTTGAATTCATCTCCACTTGCATCTTTGTCTTTGTTGGAGAAGGCTCTGCCCTTGCTTTGCGACAAATTTACAAGGAACCAGGGTCATCAGCGGGTGAGTTAGTGGTGATTGCACTTGCTCATGCATTTGGTCTATTTGCTGCTATTTCTGCAAGCATGCACGTGTCTGGTGGACACGTCAACCCTGCCGTCACTTTTGGTGCTCTTATTGGTGGAAGAATCTCCGTCCTCAGAGCCCTTTACTATTGGATTGCTCAACTTCTCGGTTCCGTAGTGGCTTCCCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCACAAGGGTTCAGTGTGTCTATCGGGCTTGGAGCGTTTCACGGTCTAGTACTTGAGATTGCGATGACATTTGGTCTGATGTACATAGTCTATGCAACTGCTATTGATCCCAAAAGGAGCAGCAGCATCAGCTCAATTGCACCCTTAGCCATAGGATTTGTTGTTGGGGCTAACATCCTGGCTGGTGGGCCGTTTGATGGAGCATGCATGAACCCAGCTCGGGCTTTTGGGCCTGCCTTGGTGGGCTGGAGATGGCACTACCACTGGATCTTCTGGGTCGGCCCATTCATTGGGGCTTCACTGGCAGCACTTCTGTATGAGTACGTTATGGTCCCAATTGAGCCTCCTCCTCATCACCACCAACCTTTAGCTGCTGAAGATTACTAG 774 0.4974 MATRRYEFGRMNEASHPDSMRAALVEFISTCIFVFVGEGSALALRQIYKEPGSSAGELVVIALAHAFGLFAAISASMHVSGGHVNPAVTFGALIGGRISVLRALYYWIAQLLGSVVASLLLRLVTNNMRPQGFSVSIGLGAFHGLVLEIAMTFGLMYIVYATAIDPKRSSSISSIAPLAIGFVVGANILAGGPFDGACMNPARAFGPALVGWRWHYHWIFWVGPFIGASLAALLYEYVMVPIEPPPHHHQPLAAEDY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1948 257 CDD MIP 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed8g1948 257 TIGRFAM MIP: MIP family channel proteins 26 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed8g1948 257 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed8g1948 257 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed8g1948 257 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed8g1948 257 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed8g1948 257 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed8g1948 257 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed8g1948 257 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 257 - -
Aed8g1948 257 SUPERFAMILY Aquaporin-like 12 249 IPR023271 -
Aed8g1948 257 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Aed8g1948 257 Pfam Major intrinsic protein 14 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed8g1948 257 Gene3D Glycerol uptake facilitator protein. 5 243 IPR023271 -
Aed8g1948 257 PANTHER AQUAPORIN-8 1 257 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1948 Aed-Chr8 24038879 24040301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1948 2 257 Major Intrinsic Protein MIP AT1G73190 66.415 3.28e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1948 K09873 - gmx:100814469 478.404