Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1920 ATGAACTGGTTGGATTTCTCTCTCTCTCCTCAAGAACTTCCATCACAACCTGATGAAGAAGAAGAACACCACTCTGATCAAAGGATGGTGACCCCTCTCCTTGGCTTCAACTCACACGATATTTCACCCATGGAATGCTTTGATCTCACTTCATTTGACTTAGTAGAATCACTCAACACAAACAATACTCATCATCACCATATAACTACTCTAGATTATTGGAACACAAAGGGTTTGGGAACATCATGCATCAGTAACCAAAACATGGACAACAACAACCAACACCACCTAAAACTTGAAAACTTTCTTTCCAAAAAACCGACAACCGGCTGTGACGGTGCTAGTTCGAAAAACACGACCAACTCTATTGGGTTATCCATGATAAAGACATGGCTGAGGAACCAAACGTCACAGTCATCAGATGCTGCAAACACATCACTTTCCATGACCTCTTCAGTGTCACAGTCAGGCACAGTAGCACTGTCCCTTCTAACTGCAGCGAGTGTGGATGGAGAAAGTTCCTCTTCGGAGAGTGCTAAGCAACAACCATCGACGATAACACTCGATGCTACTAATGTTGAAACTGTGCCTAGAAAATCTGCTGACACATTTGGACAGAGGACTTCCATATACCGTGGTGTAACCAGGCATAGGTGGACGGGTAGATATGAGGCTCACTTGTGGGACAATACAAGTAGAAGAGAGGGGCAAACTCGCAAAGGAAAGCAAGGAGGTTATGATAAAGAAGAAAAAGCAGCTAGAACGTATGATTTAGCAGCACTGAAATACTGGGGAACAACGACGACAACAACAACAAATTTTCCTATTACTCACTATGAAAAAGAATTAGAAGAAATGAAGAGCATGACAAGGCAAGAGTACGTCGCATCACTGAGAAGGAAGAGCAGTGGCTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACGAGGCATCACCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTAGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACTCAGGAAGAGGCAGCAGAGGCATATGACATTGCAGCCATCAAATTCCGAGGACTGAAAGCAGTTACGAACTTCGACATGAACAGATACGACGTTAGAAGCATACTTGAGAGCAACACTTTGCCTATTGGTACTGCTGCTGCCAAACGTTTGAAGGATGTTGAAAAGGTAGTTGACCACACCATCATGGATTCTCAAACTCAAACCTCTCACGTGGTTTCTAACAACATCAATAACTTTGGAGCTTCTCATCCTCATGCATTTCACCAACCTCATCTTTATGGCCACTTGAATTACACTTATGGACAAAACTTTTGGCGCAAGCATGAACAGGATTCTGATGATGTTATTCCTCATAGTAATAACTTTCAAGATATTCATCAACTCCAACTTGGGAATACCCATAATTTTCTTCAGCCAAATGTCATTTATGGTGGTGGGGATCATGGTTACACGATTCCCATTAATACGGCTACATCAACGTTCAATATTGCAGATGATGTTGTTCATAATGATGTGAAGATGCTTGGTTACGAAAATGTGTTCAGCTCCTCCACTGATCCTTATCATCATGCAAGGAACTTGTGTTATCTTTCGGGGCCAGCATTATCATCTGGTGATCCTGTTATTAAGGGTAGTGCTTATGATGCATGCAATAGTACTTTGGTGCAAACTGCAATTCCAACTCTTGCACCAAGGCATAACAATGTGGCTCTCTGCCCCGGAACTTCACCCTTCACATTGTTGCATGAATAG 1785 0.428 MNWLDFSLSPQELPSQPDEEEEHHSDQRMVTPLLGFNSHDISPMECFDLTSFDLVESLNTNNTHHHHITTLDYWNTKGLGTSCISNQNMDNNNQHHLKLENFLSKKPTTGCDGASSKNTTNSIGLSMIKTWLRNQTSQSSDAANTSLSMTSSVSQSGTVALSLLTAASVDGESSSSESAKQQPSTITLDATNVETVPRKSADTFGQRTSIYRGVTRHRWTGRYEAHLWDNTSRREGQTRKGKQGGYDKEEKAARTYDLAALKYWGTTTTTTTNFPITHYEKELEEMKSMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLKAVTNFDMNRYDVRSILESNTLPIGTAAAKRLKDVEKVVDHTIMDSQTQTSHVVSNNINNFGASHPHAFHQPHLYGHLNYTYGQNFWRKHEQDSDDVIPHSNNFQDIHQLQLGNTHNFLQPNVIYGGGDHGYTIPINTATSTFNIADDVVHNDVKMLGYENVFSSSTDPYHHARNLCYLSGPALSSGDPVIKGSAYDACNSTLVQTAIPTLAPRHNNVALCPGTSPFTLLHE 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1920 594 SMART rav1_2 210 281 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 SMART rav1_2 311 375 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 Pfam AP2 domain 311 361 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 Pfam AP2 domain 210 265 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 SUPERFAMILY DNA-binding domain 209 276 IPR016177 GO:0003677
Aed8g1920 594 SUPERFAMILY DNA-binding domain 310 370 IPR016177 GO:0003677
Aed8g1920 594 CDD AP2 310 369 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 3 480 - -
Aed8g1920 594 ProSiteProfiles AP2/ERF domain profile. 210 275 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 PRINTS Ethylene responsive element binding protein signature 211 222 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 PRINTS Ethylene responsive element binding protein signature 351 371 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 ProSiteProfiles AP2/ERF domain profile. 311 369 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 CDD AP2 209 277 IPR001471 GO:0003700|GO:0006355
Aed8g1920 594 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 480 - -
Aed8g1920 594 MobiDBLite consensus disorder prediction 172 192 - -
Aed8g1920 594 MobiDBLite consensus disorder prediction 1 27 - -
Aed8g1920 594 Gene3D AP2/ERF domain 210 277 IPR036955 GO:0003700|GO:0006355
Aed8g1920 594 Gene3D AP2/ERF domain 311 371 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1920 Aed-Chr8 23755666 23759316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1920 98 432 AP2-EREBP Transcription Factor Family AT5G17430 60.458 8.77e-128 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Aed8g1920 AP2 1.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1920 K09285 - gmx:100808723 613.994