Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1879 ATGGACCAAGCACTTCTCGACGACATAATCAATCGCCTCCTCGAAGTTCGCGGCCGCCCTGGCAAGCAGGTCCAGCTGTCGGAATCGGAGATCCGCCAGCTCTGCACCGCCTCCAGAGAGATTTTCTTGCACCAACCTAATTTGTTGGAGCTCGAAGCACCCATTAAGATTTGCGGTGATGTACATGGCCAATATTCTGATCTTTTAAGGCTCTTTGAGTATGGTGGACTACCTCCTGAGGCCAACTACTTATTTTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTGGAAACAATATGCCTTCTCCTAGCATATAAAATAAAATATCCGGAGAATTTTTTCCTTTTGAGGGGTAACCATGAATGTGCTTCTATTAACCGTATATATGGATTTTATGATGAGTGTAAAAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGAGTGCTTCAATTGCCTGCCTGTGGCAGCACTAATTGATGAAAAGATTTTGTGCATGCATGGGGGTCTTTCTCCTGACTTACTTCATTTGGATCTGATTAGAAATCTACAGCGACCCACTGATGTGCCTGATACAGGTTTGCTTTGTGATCTCCTCTGGTCAGACCCAAGCAAAGAGGTCCATGGTTGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATTTGGATCTTGTTTGTCGTGCTCATCAGGTTAAACTCCTGCCTTTAGTGTTCAATGTGCTATATCAAGTCTTCAGGGTTGATCCTTCATGGGTACAAAAGTATGAAGTTAATTTTGGTGAAATTGCTGTCACAACCGGTCAGCTTGGTCTTGAAGATGTAATAGTTGCTAGAAAAGGAAAGTAG 891 0.4321 MDQALLDDIINRLLEVRGRPGKQVQLSESEIRQLCTASREIFLHQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALIDEKILCMHGGLSPDLLHLDLIRNLQRPTDVPDTGLLCDLLWSDPSKEVHGWGMNDRGVSYTFGADKVSEFLQKHDLDLVCRAHQVKLLPLVFNVLYQVFRVDPSWVQKYEVNFGEIAVTTGQLGLEDVIVARKGK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1879 296 Gene3D - 1 271 IPR029052 -
Aed8g1879 296 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Aed8g1879 296 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Aed8g1879 296 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Aed8g1879 296 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Aed8g1879 296 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Aed8g1879 296 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Aed8g1879 296 SMART pp2a_7 26 278 IPR006186 GO:0016787
Aed8g1879 296 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 246 - -
Aed8g1879 296 Pfam Calcineurin-like phosphoesterase 54 245 IPR004843 GO:0016787
Aed8g1879 296 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 246 - -
Aed8g1879 296 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Aed8g1879 296 SUPERFAMILY Metallo-dependent phosphatases 17 249 IPR029052 -
Aed8g1879 296 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1879 Aed-Chr8 23476171 23480479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1879 55 242 Calmodulin-binding Proteins AT5G63870 30.942 8.91e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1879 K06269 - gmx:100799218 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2606 2 28386719 28391545 Aed8g1879 8 23476171 23480479 ECH
Aed8g1879 8 23476171 23480479 Aed8g1879 8 23476171 23480479 ECH