Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1878 ATGTGCGAAACCCTAAAGACGCAGTACCAAGTTAGCGAGGAGATCGGTCGCGGTCGTTTCGGCACCATCTTCCGCTGTTTCCACCCACTCTCCAACGTACCCTACGCCTGCAAAGTCATCCACAAACCCCTCCTCGAAGACTCCACCGACCGCGAGTGCCTCCAAAACGAACCCAAATTCATGACCCTTCTTTCCCCTCACCCCAACATCCTCCAAATCTTCGACGTCTTCGAGGACGACGAATATCTCTCCATGGTAATGGATCTCTGCCAGCCGCACACACTTTTCGACCGCATGGTGGACGGTCCCATCGCGGAGCCTCAGGCCGCCGCGCTCATCAAGAGCCTTCTGGAGGCCGTGGCGCACTGCCACCGCCTCGGCGTGGCCCACCGCGACATTAAGCCGGATAACATTCTCTTCGATTCGGCGGATAATCTGAAGCTCGCGGACTTCGGTTCCGCGGAGTGGTTTGGCGACGGGAAGAGCATGAGCGGCGTGGTGGGGACGCCGTATTACGTGGCGCCGGAGGTTGTGATGGGGAGGGAGTACGACGAGAAGGTTGATGTGTGGAGCTGTGGGGTGATATTGTATATTATGTTGGCCGGGATTCCCCCTTTTTACGGAGAGTCCGCTGCGGAGATCTTTGAGGCTGTGCTTAGGGCTAATCTCAGGTTTCCTTCTAGAATCTTCCGGACTGTGTCCCCCGCCGCCAAGGATCTCTTGAGAAAAATGATCTGTCGAGACTCTTCTAGAAGATTCTCCGCAGAACAAGCCTTGAGACACCCTTGGATCTTGAGTGCGGGTGACACGCCTGAGCTCACTTGA 825 0.5636 MCETLKTQYQVSEEIGRGRFGTIFRCFHPLSNVPYACKVIHKPLLEDSTDRECLQNEPKFMTLLSPHPNILQIFDVFEDDEYLSMVMDLCQPHTLFDRMVDGPIAEPQAAALIKSLLEAVAHCHRLGVAHRDIKPDNILFDSADNLKLADFGSAEWFGDGKSMSGVVGTPYYVAPEVVMGREYDEKVDVWSCGVILYIMLAGIPPFYGESAAEIFEAVLRANLRFPSRIFRTVSPAAKDLLRKMICRDSSRRFSAEQALRHPWILSAGDTPELT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1878 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Aed8g1878 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Aed8g1878 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 272 - -
Aed8g1878 274 CDD STKc_CAMK 8 263 - -
Aed8g1878 274 Gene3D Transferase(Phosphotransferase) domain 1 93 272 - -
Aed8g1878 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Aed8g1878 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g1878 274 SUPERFAMILY Protein kinase-like (PK-like) 5 267 IPR011009 -
Aed8g1878 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g1878 274 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 272 - -
Aed8g1878 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1878 Aed-Chr8 23454341 23455705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1878 5 272 EF-hand Containing Proteins AT1G35670 43.382 1.71e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aed8g1878 Pkinase 2.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1878 - K08794 gmx:548089 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2605 2 28383269 28384196 Aed8g1878 8 23454341 23455705 ECH
Aed8g1878 8 23454341 23455705 Aed8g1878 8 23454341 23455705 ECH