Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1874 ATGACGACACCACCGTCTTCCTCCTCAGCTTCGCAATCGCAATTCACCTATTCAAACCCCTCCTCCTCCTACTTCCCTGTTCCCTTTCACCTTCAGCAACCCGCGACCACTCACTACGCTGCGCCCTACGTCGCCGCCCCCTCCGTGCAACTCCCCGCTCCTCCCGTCGTCGGTCCCGTTGCGCCAGCGCCCGTTCCCGGTGTTTACTCCGCCGTGCCGCAATACCAGGCACAGCAGTTGTTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCTCTCGAGAATGTTAAGGCAGCGATTGCGAGCAGCGACGTGGAGCACAAAACTGATGCCAAAAAGAAAGCCGTTCCTCGCAAAGCTGCTGGTCTATCTTGGGAGGATCCTATCCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTCTGTGGTGATCTTGGTAATGAGGTGAATGATGACGTTCTCTCCAAAGCATTTGCACGATTTCCTTCCTTTAACATGGCACGAGTTGTCAGAGATAAACGGACTGGGAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTGCCGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTATGTTGGAAATAGGCCAATAAAACTACGCAAGAGTAAGTGGAAGGAGAGGACGGATTATGAAGCACTGGAGAAACATAAGAATCACATTCATAAGAAACCGAAAATGCCAAGGAAAGGTGTGCTGCACAAATGA 741 0.5088 MTTPPSSSSASQSQFTYSNPSSSYFPVPFHLQQPATTHYAAPYVAAPSVQLPAPPVVGPVAPAPVPGVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKKKAVPRKAAGLSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFARFPSFNMARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKHKNHIHKKPKMPRKGVLHK 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1874 246 PANTHER RNA-BINDING PROTEIN 42-LIKE 36 246 - -
Aed8g1874 246 MobiDBLite consensus disorder prediction 1 20 - -
Aed8g1874 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Aed8g1874 246 Gene3D - 86 228 IPR012677 -
Aed8g1874 246 MobiDBLite consensus disorder prediction 226 246 - -
Aed8g1874 246 CDD RRM_RBM42 132 214 IPR034215 -
Aed8g1874 246 SMART rrm1_1 139 212 IPR000504 GO:0003723
Aed8g1874 246 MobiDBLite consensus disorder prediction 230 246 - -
Aed8g1874 246 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 36 246 - -
Aed8g1874 246 SUPERFAMILY RNA-binding domain, RBD 122 218 IPR035979 GO:0003676
Aed8g1874 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1874 Aed-Chr8 23431001 23434348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1874 140 227 Eukaryotic Initiation Factors Gene Family AT1G71770 28.409 1.42e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1874 K25079 - gmx:100800281 436.417