Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1871 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCACTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTCGATCCCTCCATAAAAAAGACCGAGTGGACGAGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTATGCCCACGCAGTGGAGAACAATTGCTCCAATTGTTGGCCGTACCCCTTCTCAGTGTCTTGAGCGGTACGAGAAGCTCCTTGATGCAGCCTGTGTGAAGGATGAGAACTATGAGCCTGGTGATGATCCACGGAAATTGCGTCCTGGAGAGATTGATCCAAACCCTGAGTCTAAACCTGCACGACCAGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGGGCCCGGTTAGCCAACACAAAGGGTAAGAAAGCAAAAAGGAAAGCAAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAAAAGAGAGAATTGAAGGCTGCCGGAATTGATATTAGGCAGCGGAAGAGAAAAAGAAAAGGAATAGATTACAATGCAGAAATTCCATTTGAAAAAAGGCCTCCTCCAGGGTTTTTTGATGTTACAGATGAAGATAGACCATTGGAACATCCCCAGTTCCCTACTACAATTGAAGAACTTGAAGGGAAAAGGAGGATTGATGTTGAGGCACAATTAAGAAAGCAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCAATATTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGGTCAAAGTTGATGCTCCCACCACCCCAAATTTCAGATCAGGAATTGGATGAAATTGCAAAGTTGGGTTATGCTAGTGACCTTGCAGGAAGTCAGGAACTTGCTGAAGGTAGTGGTGCAACACGGGCTCTTCTGGCTAATTATGCACAGACACCTGGCCAAGGAATGACTCCTTTGCGAACCCCTCAGAGAACACCGTCTGGGAAAGGTGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAAACACCATTGTTAGGAGGAGAGAACCCAGAGTTGCATCCTTCAGATTTTTCTGGTGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAATCCAATGCTGACTCCTTCTTCAACTCCTGGAGGTGCAGGTCTCACTCCTAGAATTGGCATGACACCAACAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAGGATATGAATATGCATGACAGCACTAAACTTGAGCTACAGAGACAGGCTGATATGAGAAGAAGTTTGTGTTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCGGTTCCAGAAGACACTGAAGAGCCCCCTGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAAGCAGAAGAAGATGCAAGGCTGCAGGCATTGCTTAGAAAGCGATCGAAAGTCCTTCAACGGGAACTTCCTAGGCCTCCCACAGGATCATTGGAGCTTATAAGAAATTCCTTGATGAGAACTGACGGGGACAAGAGTTCCTTTGTTCCCCCAACCTCTATTGAGCAAGCTGATGAGATGATTAGAAGGGAGCTGCTAACTTTACTGGAGCATGACAATGCTAAGTATCCACTTGATGAAAAAGTGAATAAGGAGAAAAAGAAAGGAGCCAAGCGTGCCGTAAATGGGTCTGCTGTCCCTGTGATTGAAGATTATCAGGAAGATGAAATGAAAGAGGCTGATAAGTTGATAAAGGAAGAGGTCCAGTATCTTTGTGCAGCAATGGGACATGAAGATGAACCCCTTGATGAATTTATTGAAGCACACAGAACCTGTCTCAGTGATCTTATGTACTTTCCTACCCGTAATGCATATGGTCTCTCTAGTGTTGCTGGAAACATGGAAAAGCTTGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAACAAATTGGATGACGGTAAGGAGAAGATGGTACGTCTTGAGAAGAAGGTGATGGTTCTCACGCAAGGCTATGAGAAAAGCCTTTGGCCACAAATTGAGGCGACTTTCAAGCAGATGGACGTAGCTGCAACTGAGTTAGAATGCTTCAAAGCTTTGCAAAAGCAGGAGCAATTAGCAGGATCCCATAGGATAAACAATCTGTGGGCTGAAGTACAGAAGCAAAAGGAACTTGAGAAAACTTTGCAAAATAAGTATGGGAGTCTAATTGAAGAGCTGGAAAAGATGCAAAGTGTCATGGACCAATGCAGATTACAAGCACAACAGCGAGAAGAAATTGAAGCAAACAACCATGCTCGTGAGTCAATTGAGACCAAGGCTGATGAAACTGACGTACAAAGTACAGAAAATTGTGAAGCTGTACCTCACTCGGTAGAGCATGGACATGCTCTAGCACTTGAGTCATCTCATGATGGAACTGCTGACCAGCAAGTAGATATTGTGCAAGACCAGGCTACTTCTATACCCAGTCATGACATGGTTGTGGATTCTGATAAATTGGAAAATCCTACACCAGCTGCAAAGAATGTCGATGAAAAAGTGGAAGGTACCAGTACCGGGGAGCCCATGCCAGAAATGGGTGCTGCTGTGGAAGTAAGTAGCCCCAATCATGATGTAGTTGCAGATGCGGTAAACTCACCTGGTAACAGCATGGAAGAAACCAATGTTGTTGGGGAGGAAGAGACAAATTAG 2853 0.4441 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPLEHPQFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELAEGSGATRALLANYAQTPGQGMTPLRTPQRTPSGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIQTPNPMLTPSSTPGGAGLTPRIGMTPTRDGFSFSMTPKGTPLRDELHINEDMNMHDSTKLELQRQADMRRSLCSGLGSLPQPKNEYQIVMQPVPEDTEEPPEEKIEEDMSDRIAREKAEEDARLQALLRKRSKVLQRELPRPPTGSLELIRNSLMRTDGDKSSFVPPTSIEQADEMIRRELLTLLEHDNAKYPLDEKVNKEKKKGAKRAVNGSAVPVIEDYQEDEMKEADKLIKEEVQYLCAAMGHEDEPLDEFIEAHRTCLSDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRNKLDDGKEKMVRLEKKVMVLTQGYEKSLWPQIEATFKQMDVAATELECFKALQKQEQLAGSHRINNLWAEVQKQKELEKTLQNKYGSLIEELEKMQSVMDQCRLQAQQREEIEANNHARESIETKADETDVQSTENCEAVPHSVEHGHALALESSHDGTADQQVDIVQDQATSIPSHDMVVDSDKLENPTPAAKNVDEKVEGTSTGEPMPEMGAAVEVSSPNHDVVADAVNSPGNSMEETNVVGEEETN 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1871 950 CDD SANT_CDC5_II 55 106 - -
Aed8g1871 950 Coils Coil 683 717 - -
Aed8g1871 950 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Aed8g1871 950 PANTHER - 1 840 - -
Aed8g1871 950 MobiDBLite consensus disorder prediction 926 950 - -
Aed8g1871 950 Gene3D - 60 114 - -
Aed8g1871 950 MobiDBLite consensus disorder prediction 882 914 - -
Aed8g1871 950 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 840 - -
Aed8g1871 950 Coils Coil 167 187 - -
Aed8g1871 950 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Aed8g1871 950 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Aed8g1871 950 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Aed8g1871 950 SMART sant 58 105 IPR001005 -
Aed8g1871 950 SMART sant 6 55 IPR001005 -
Aed8g1871 950 MobiDBLite consensus disorder prediction 113 150 - -
Aed8g1871 950 MobiDBLite consensus disorder prediction 378 447 - -
Aed8g1871 950 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Aed8g1871 950 MobiDBLite consensus disorder prediction 399 419 - -
Aed8g1871 950 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Aed8g1871 950 CDD SANT 10 53 IPR001005 -
Aed8g1871 950 Pfam Myb-like DNA-binding domain 10 70 - -
Aed8g1871 950 Gene3D - 5 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1871 Aed-Chr8 23399964 23407511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1871 1 832 MYB-Related Transcription Factor Family AT1G09770 75.089 0.0 1230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed8g1871 Myb_Cef 1.1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1871 K12860 - gmx:100790369 1687.55