Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1870 ATGGTGAAAACTCCTTGTTGCGAGAAGATGGGGTTGAAGAAGGGACCTTGGACACCAGAAGAAGATCAGATTTTGATTTCGCATATTCAACGATATGGCCATGGAAATTGGCGTGCCCTTCCAAAACAAGCCGGTTTGTTAAGGTGTGGTAAGAGTTGTAGACTTCGTTGGATAAATTACTTAAGACCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGACATCATCCTCAAACTACATGGAATTCTTGGAAATAGATGGGCTACTATTGCGACAAGATTACCAGGACGAACAGACAATGAGATAAAGAATTTTTGGCACACCCATCTGAAGAAGAGAGTGCACAATACTTCTTCTAATCCCTTGCAAGAGACCTTAATAAATATGCCACCAGTAGCGGTGGAAGCTTCGGGTGCTTCTTCTAGTACTGTCACTAGTAGGACTAGGAGATTTTATGGCACTGTCTCTTCTGATATTTCAGGAGAAATACTTGACAATAATTCCCACAGTGAGATCGGTGAGGAAATGGAATTTTGGTATAATATGTTTATGAACAGTAGTCATCACAATTCACAAGGCCATGAAAATGTAAGACAGATCGCATAA 612 0.4036 MVKTPCCEKMGLKKGPWTPEEDQILISHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDIILKLHGILGNRWATIATRLPGRTDNEIKNFWHTHLKKRVHNTSSNPLQETLINMPPVAVEASGASSSTVTSRTRRFYGTVSSDISGEILDNNSHSEIGEEMEFWYNMFMNSSHHNSQGHENVRQIA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1870 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed8g1870 203 CDD SANT 69 112 IPR001005 -
Aed8g1870 203 CDD SANT 16 61 IPR001005 -
Aed8g1870 203 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed8g1870 203 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed8g1870 203 Gene3D - 68 130 - -
Aed8g1870 203 Gene3D - 13 66 - -
Aed8g1870 203 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 193 - -
Aed8g1870 203 SMART sant 13 63 IPR001005 -
Aed8g1870 203 SMART sant 66 114 IPR001005 -
Aed8g1870 203 PANTHER MYB TRANSCRIPTION FACTOR 1 193 - -
Aed8g1870 203 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Aed8g1870 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed8g1870 203 Coils Coil 196 203 - -
Aed8g1870 203 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed8g1870 203 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1870 Aed-Chr8 23398219 23399112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1870 1 198 MYB Transcription Factor Family AT2G31180 51.724 8.73e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed8g1870 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1870 K09422 - gmx:100797027 280.026