Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1863 ATGAATTGCAAGCGAATCACTTGTATTGCTCCAGAATTACATGAATCTTGGGTTGCTTCTGAATTGCATATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCAATGATGATTCAGATGATGAGGAATCTGTAGTTCCGGAAATAGACGATGAAGTGCATCTTGAGGAGCCATTATCAGAAGAGCCGCTAACAGAAGAAGAAATACAAGATCTTATTTCTGAATTGATAGAATTGGAGAGTAAGTTGGAAAGTGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTGCTCACTTACTGGAACAACTTGATGGGGCTGGCATTGAGCTTTCTAGCCTTTATAAGTGGATTGAAAGAGAAGCTCCTAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCATTGGGTTGGCTCTCTGGCCACTGCTGAAATTGCTGAGTCGATTTCTGATGCTGAGAAACATCTGCAAGAAAACAGACCTGTTAGAAGGCGACATGGTAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAGCTTTGTGATGAAACCCAGGAGCCAGTAAAGATCGAAACTAAGGGGGATTGGGATCTGTTCAATAAAATAGTTTCTGATGGGAGTGATAATGATGCTTCATTTGGAAGTAAGCATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAGGCTGCTTTGATGGGACTCAATTTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTAAGGATCCATTTATTGCAGCTGCTATTGAAAATGAAAGAGAATTAGATCTTTCTGACGCGCAAAGAAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGTAATTGTTGATAGGAAACTTCAAATCCGTTTGAAACATAGGAGGCATAAAAGAAAAAGTAAACAGCGAGAAATTAGCACACCTATCCTGTTGACGGAGAACAACATACAGAAGCCTTTGTCTGTTGATCATTTAAGCCTTGTTATGGAGGAAGGATCTAGCGATGATGGGAAAATTGTGTCTGACAATGGCAAGGATACATGTGTGCTTATGGATGCCGATAAAATTAAAGGTTTTGATGCCAGTCATCATCTTGACAAAGAAAAGCTTACGAGTACTGGTGGTTTGTCTGATCCAGCCAAATCTTCATCGGATGATGTTATTGAACAGAGGGGAATCAAACGTGTAAACAGTGATGAGCTTGATGCTGACAATAAAAAGTGTCGGATTGTTATTATTGACAGTGATAATGAAGCTGAGGTCACTGAAGAGAAATTAGAGTGCAATACTGAAAAGGTAAAAGAAGATTTATGTAACAATGGTGCCAATTCTCTTCCTTCAGAGTGTCTGGATGACAAATTTTGGTGCACAGTTTGTCATAAAGTGGCTCTTGAAGTGCATCCACACCCTTTCTTGAAAGTGATTACTTGTGGAGATTGCAATTTCATATTAAAAGAAAAGGCACATAAAAAGGATCTGGGACAAGATTGTTCAGAGGGTTACTGTACATGGTGTGGAGGAAGCAGTGAATTAGTTAGTTGTAAATCATGCAAGATTTTATTCTGCACCAAATGTTTAAAGAAGAATCTTGGTGTAGAATTGGCTCCTAGAACTGAGGCCACTAGCTGGCATTGTTGTTGTTGTCATCCAAATCTTTTGCATAAACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTGATACAATAGTTTCCAGTTCTGTTAGTGATTCAGATGATTCAGATAATTCAGATGATTCTGATGATTCAGATGATTCAGATGCTGAGATTAGTGTTACAATCAGCTCCAAGCGAAGACCCAAAAAGAAGATTCGGAGGATACTTGATGATGCTGAATTAGGAGAGGAGACAAAGAGGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAATCTTTGAGAGGACAGTTTTCTGCTTCGTCATTTGAGATGAGCTCTGTAGGTTGTAATGGGAATTTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCCGCTAAACTGAAGGCCCATCAGATTGCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATCGCTTTTTTGTACACTGCAATGAGATGTGTTGATTTGGGGTTAAGAACTGCGCTTATAGTCACACCTGTCAATGTCCTGCATAATTGGAAGCAGGAGTTCATCAAGTGGAGACCATCTGAGTTAAAGCCACTCAAGGTCTTCATGCTGGAAGACGTATTAAGAGATAAAAGGGCAGAATTACTTGCAAAATGGAGATCTAAAGGTGGTATCTTTTTGATTGGTTATACTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGCACATGGCCAGAGAACTTTGCCGGGCTTTGCAGGTTCAAATAGTTCTTGGTATTTCAATCCCCTCAATGACCTCAGGTACTACCACAGCTCATAGCTGCAGCAGCAATTATGTCTGCAAAGGTGAACCTTTTATTTTGAAGAACAACACCGTAGGAACAATATTCTGCAATTCGAATTTATACAAGCAGGAATCATGCAATTCTTCTCCAAATCGCGATTCATGTCAGATTCATGAGATTCGTACTGTGATTCATGCACAAAAACGATTCGCTCTGCGATTTGTATTGCCAGCTGCTGGAATCGCATCCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTGATCGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTACGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGATATGAATGTGGTGAAGAAGGATCTACCCCCCAAAACTGTCTTCGTGATAACTGTCAAGCTTTCTCCCTTGCAGAGAAAATTGTATAAGAGATTCCTTGATGTGCATGGGTTCACTACTCAGGAGCATCCCGAAATGTTAAGGAAGAGGTGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGTTAAGGACTACGTAAAACACGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCCAGTGACGAAAATTCTGATTATAATGTACTTGCTGGAGGTAAAGGTTGGTGGAATGATCTTCTCCATGGAAAAATTTATAAAGAGATTGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACCATGAGTTCTGATGTGGGCGATAAGGTGTTAGTTTTTAGTCAGAGCATACCCACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGCAAACGAGAAAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGTTGGATGGAAGGACAGCAAGTTCTGACAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAACCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTGTTTGCTTATAGATTGCTGGCTCATGGAACTATGGAAGAGAAGATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGACAACAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGATGACAACCCTGAGACTTTGGCTGATCTAAGTCAAGAAAATGGGCATCAAGACAACCCAATTTCAGTTGGGCGTTCACTGAAACACACAGCACCACAATCAAATGGAAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATGATCCACGGTGGATTGCCCATTATCATGAACATGAATCCCTGCTACAAGAAAATGAAGAGGAAAAGCTGTCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGGAAATCGTTGGAATGGGAAGAAGTACTGAGAGTACCACTAGGTGAGTCTGTTATGCCTGAACAGAAGCCAGAAATGCCAAATGCAATGCCCCAAAATGTATCAGAAAGCTACAGCATCTTGCCAACTAAACTAAGCAGACGTTTCATGACTCGGAAATGCACCAACCTTGCGCATATGTTGACACTTCGAAGCCAAGGAACAAAATTTGGATGCAGTACTATCTGTGGGGAATGCGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 4488 0.41 MNCKRITCIAPELHESWVASELHMEGKTEDEVVDIESASSGSFNDDSDDEESVVPEIDDEVHLEEPLSEEPLTEEEIQDLISELIELESKLESAVADEMATFKEEWEAVLDDLETESAHLLEQLDGAGIELSSLYKWIEREAPNVCSTEAWKKRNHWVGSLATAEIAESISDAEKHLQENRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKIETKGDWDLFNKIVSDGSDNDASFGSKHWASVYLASTPQQAALMGLNFPGVDEVEEIDDVDGNSKDPFIAAAIENERELDLSDAQRRQFKKVKEEDDVIVDRKLQIRLKHRRHKRKSKQREISTPILLTENNIQKPLSVDHLSLVMEEGSSDDGKIVSDNGKDTCVLMDADKIKGFDASHHLDKEKLTSTGGLSDPAKSSSDDVIEQRGIKRVNSDELDADNKKCRIVIIDSDNEAEVTEEKLECNTEKVKEDLCNNGANSLPSECLDDKFWCTVCHKVALEVHPHPFLKVITCGDCNFILKEKAHKKDLGQDCSEGYCTWCGGSSELVSCKSCKILFCTKCLKKNLGVELAPRTEATSWHCCCCHPNLLHKLSLQLEKAVGSADTIVSSSVSDSDDSDNSDDSDDSDDSDAEISVTISSKRRPKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSFEMSSVGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWKQEFIKWRPSELKPLKVFMLEDVLRDKRAELLAKWRSKGGIFLIGYTAFRNLSFGKHVKDRHMARELCRALQVQIVLGISIPSMTSGTTTAHSCSSNYVCKGEPFILKNNTVGTIFCNSNLYKQESCNSSPNRDSCQIHEIRTVIHAQKRFALRFVLPAAGIASFQNPIENGQHTNSTLIDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPEMLRKRCFFAGYQALARIWNHPGILQLTKEVKDYVKHEDAVENFLVDDSSSDENSDYNVLAGGKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKREKFWKKGKDWYRLDGRTASSDRQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLADLSQENGHQDNPISVGRSLKHTAPQSNGSSYSDKLMESLLSKHDPRWIAHYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVLRVPLGESVMPEQKPEMPNAMPQNVSESYSILPTKLSRRFMTRKCTNLAHMLTLRSQGTKFGCSTICGECAQEIRWEDLKKR 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1863 1495 Pfam Helicase conserved C-terminal domain 1137 1261 IPR001650 -
Aed8g1863 1495 Coils Coil 77 97 - -
Aed8g1863 1495 Gene3D - 1017 1341 IPR027417 -
Aed8g1863 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 856 IPR027417 -
Aed8g1863 1495 PANTHER RAD54-LIKE 968 1493 IPR044574 GO:0016887
Aed8g1863 1495 Coils Coil 1377 1397 - -
Aed8g1863 1495 MobiDBLite consensus disorder prediction 608 624 - -
Aed8g1863 1495 MobiDBLite consensus disorder prediction 1326 1358 - -
Aed8g1863 1495 Gene3D - 702 872 IPR038718 -
Aed8g1863 1495 PANTHER RAD54-LIKE 73 875 IPR044574 GO:0016887
Aed8g1863 1495 PANTHER RAD54-LIKE 968 1493 - -
Aed8g1863 1495 Coils Coil 103 123 - -
Aed8g1863 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1325 IPR027417 -
Aed8g1863 1495 CDD ADDz_ATRX 481 579 - -
Aed8g1863 1495 PANTHER RAD54-LIKE 73 875 - -
Aed8g1863 1495 MobiDBLite consensus disorder prediction 601 627 - -
Aed8g1863 1495 Pfam SNF2-related domain 751 857 IPR000330 GO:0005524|GO:0140658
Aed8g1863 1495 MobiDBLite consensus disorder prediction 398 420 - -
Aed8g1863 1495 CDD SF2_C_SNF 1129 1272 - -
Aed8g1863 1495 Pfam SNF2-related domain 969 1075 IPR000330 GO:0005524|GO:0140658
Aed8g1863 1495 MobiDBLite consensus disorder prediction 1322 1358 - -
Aed8g1863 1495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1141 1309 IPR001650 -
Aed8g1863 1495 ProSiteProfiles ADD domain profile. 473 605 IPR025766 -
Aed8g1863 1495 SMART helicmild6 1164 1261 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1863 1147 1314 RAD5 or RAD16-like Gene Family AT5G43530 35.714 3.12e-21 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed8g1863 Helicase_C 2.1e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1863 K10779 - gmx:100818409 2322.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1863 8 23326625 23360267 Aed8g1863 8 23326625 23360267 ECH