Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1841 ATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGCGGGTCTGCGAGTGATCACAACGAGTCATCAACAGTAGTTAAGGGAAGCAGCGGTGGCAAGAGAGGCTTCTCTGAAACTTCTTCTTCTTCTGTTGATTTGAAGCTAAACCTTTCTTCTAATAACGACTCGGATTCACCCTCATCTGACACAAGTGTTAGGTCATATAGAAAGAACATAGTGAATAGGAATAACAGCAATGAAGAGGGAGAGAAGAGCACTAACACGTTCGTGAAGGTGAGCATGGATGGTGCACCGTATCTACGAAAGGTGGACATCAACTTGTACAAGACCTACCAGGACCTGTCTGATGCGCTGGCTAAGATGTTCAGTTCCTTCACTATTCAAAAATGTGGGTCCCATGGGATCAAAGACTTCATCAAATTGATTGACCTTTTGAACGGCTCTGATTATGTCCCCACTTATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGATGTGCCCTGGGAGATGTTCGTTGAATCATGCAAGCGCCTCCGCATAATGAAAGGTTCTGAGGCAATTGGCCTTGCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGA 615 0.4683 MINFEETELRLGLPGGSASDHNESSTVVKGSSGGKRGFSETSSSSVDLKLNLSSNNDSDSPSSDTSVRSYRKNIVNRNNSNEEGEKSTNTFVKVSMDGAPYLRKVDINLYKTYQDLSDALAKMFSSFTIQKCGSHGIKDFIKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1841 204 MobiDBLite consensus disorder prediction 1 89 - -
Aed8g1841 204 ProSiteProfiles PB1 domain profile. 89 186 IPR000270 GO:0005515
Aed8g1841 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 61 IPR003311 GO:0005634|GO:0006355
Aed8g1841 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 197 IPR003311 GO:0005634|GO:0006355
Aed8g1841 204 PANTHER AUXIN-INDUCED PROTEIN AUX28 2 61 - -
Aed8g1841 204 PANTHER AUXIN-INDUCED PROTEIN AUX28 66 197 - -
Aed8g1841 204 MobiDBLite consensus disorder prediction 18 89 - -
Aed8g1841 204 SUPERFAMILY CAD & PB1 domains 85 185 - -
Aed8g1841 204 Pfam AUX/IAA family 6 195 IPR033389 -
Aed8g1841 204 Gene3D - 83 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1841 Aed-Chr8 23121064 23123262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1841 87 194 B3 DNA Binding Superfamily AT4G23980 33.333 1.58e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed8g1841 AUX_IAA 7.4e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1841 K14484 - gmx:100781847 281.952