Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1840 ATGGCAGGTGGTAATAGTGGGTCGTCGGAGGGGTTGGGCGATGATTTCTTTGAACAGATCTTAGCCGTGCCCGAAGCCCCTCCAGTGGGAGTGGGATATGGCGTTGGAATGTTGCAATTGGGGTCCACAAGAGGAGCAGGGTTAATGCCTCTGGGGTTGAATTTGGAGCAAGCTGGGTTTCTAAGACACTCACACCACCAAGTTGACGATGACGACACCATTCACCACTTCACTACCTCCTCCTCTTCCACTGCACCAGTCATAACCGATAGGGATTCGATGCATATGAGAGGTTTGTTTCCAGCGTTTGGACCAACTTCCACTCTTCCTCACTCCGTCCGCCCCACTCTGCCGTCGCCTCCTCATCCTCAGCCACAACTCCACCTCCACCACCATCACCAACAGGGGTTTCAGGGGCAGGCAGGTGCAGGTCCAGCGTCAATGGGTACTACCTTACAACCACCTGGCATCCGCCCTCGAGTGAGAGCAAGAAGAGGCCAGGCAACAGATCCACACAGTATTGCTGAGCGGCTACGTCGTGAAAGAATCGCCGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCAGCAATGCTTGATGAAATTGTGGATTATGTCAAGTTCCTAAGGCTTCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGAGGAGCTGGTGCAGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGGGGGAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGATGGAACAGAACAACAGGTGGCTAAACTTATGGAAGAAGACGTGGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTCTCATGCCCATATCTCTAGCCTCAGCCATTTTTCGCATGCCTCAATCAGATGCATCAACAGGCAGCATCAAGCCTGAATCTAACACTCACTCATAG 975 0.519 MAGGNSGSSEGLGDDFFEQILAVPEAPPVGVGYGVGMLQLGSTRGAGLMPLGLNLEQAGFLRHSHHQVDDDDTIHHFTTSSSSTAPVITDRDSMHMRGLFPAFGPTSTLPHSVRPTLPSPPHPQPQLHLHHHHQQGFQGQAGAGPASMGTTLQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGEDIEGGANEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCLMPISLASAIFRMPQSDASTGSIKPESNTHS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1840 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 226 IPR036638 GO:0046983
Aed8g1840 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 310 - -
Aed8g1840 324 Pfam Helix-loop-helix DNA-binding domain 172 216 IPR011598 GO:0046983
Aed8g1840 324 SMART finulus 173 222 IPR011598 GO:0046983
Aed8g1840 324 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 10 310 - -
Aed8g1840 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Aed8g1840 324 Gene3D - 162 224 IPR036638 GO:0046983
Aed8g1840 324 MobiDBLite consensus disorder prediction 107 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1840 Aed-Chr8 23110330 23114530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1840 153 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.363 1.01e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed8g1840 HLH 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1840 - - gmx:100807570 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0869 8 7423489 7428500 Aed8g1840 8 23110330 23114530 ECH
Aed8g1840 8 23110330 23114530 Aed8g1840 8 23110330 23114530 ECH