LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g1808	ATGCCTGTTCCTAACGGAGAAGAGCAGATTCTGTTACCTGAAAATGCAAGTGAGGTTTCAAAGTCATTGGATTTGAACTCAGATTCGGTTGATGGGTCCCCACCTGTTTCCACCGTTTACACTGATGTGGGTGTCGTGCCAGAACATCAAAATAACGAGCTTCACCACTTGATATCCAATTCAGAAATAGGAGAAATTGAGGAGCTGAGACTCAAGCAGAAGAAATTGGATAAAAAGCGAAAAGAAGCATTGAGTAAGATATTGGACATCAAAGGGAGTATTCGAGTATTTTGCAGAATTCGACCAAATCTGATAGTGGATAAGAGAAGAATTTCTGAACCGGTGTCAGCTGGACCGGAAAATGTTCGGGTCAAGATGGGGGGAACAAGGAAAGATTTTGAGTTTGATAAGGTTGAGCCAATTCTAAGATCTGCAATGGACGGGCACAATGTGTGTGTTTTTGCCTACGGTCAAACAGGCACAGGGAAGACATTCACCATGGATGGTACAAACGAGGAGCCAGGGATTATTCCGCGTGCACTTGAAGAGCTCTTTCGTCAAGCCTCGTTGGATAATTCATCTTCTTTCACTATTACAATGAGCATGTTGGAAGTTTATATGGGCAATCTCAGGGATTTGCTAGCTCCAAGACCCTCTGGTAGACCACATGAACAACCTATGACGAAGTGCAATCTCAACATTCAAACAGATCCAAAGGGATTGATTGAAATTGAGGGTCTCTCAGAAGTGCAAATCAGCGATTATGCTAAAGCCAAATGGTGGTACAACAAGGGCAAACGGTTCAGATCAACGTCGTGGACTAATGTGAATGAGGCATCAAGCAGGTCACACTGCTTGACGAGGATTAGCATATTTCGACGTGGGGATGATTTGGAAGCCAAAGGTGAAGTGAGTAAACTGTGGATGGTTGATCTTGGAGGCAGTGAACGGTTGCTTAAAACTGGAGCCAGAGGACTAACACTTGATGAGGGCAGAGCCATTAATCTTTCTCTTTCAGCTTTAGCTGATGTTGTTGCAGCTTTGAAAAGGAAGAGGTGTCATGTGCCTTATAGGAATAGCAAGCTGACTCAAATACTGAAAGATTCTCTTGGGTATGGCTCAAAGGTGTTGATGCTCGTGCATATAAGCCCTTCCGAAGAAGATGTTTGTGAAACAGTTTGTTCCTTAAACTTTGCAAAGAGAGCGAGAGCAATAGAGTCCAACAAAGAAGTGCCAGCGGAGGTGAAGAAGCAAAGGGAGAAGAAGATTATGGAGCTAGAGGAAGACATCGAAGAAGCTGAAAAACAGTGCCAGAATTTAAGAGAACAAATACAGAAGATTGAGTTGAAGCTAAATGAGAGTAAAAAGCTCTTATCAACCGCATATAATCTTGTGGAAAGTGATGACATAACATCAATTAGCCCCAAAGATGATCTCAAAGACGTTATTGAAACCCCTAAAGCATCCAAGAAGACAATCAAAAGAAATTTCTCGAATTCAATGCCTCGATTCATGACTTCAACTGTTGCAAGTCGCCAAAGGAAAAGTGCTGCAGAACGAGACATTAGTACTGTGAGATTGAAAAGTTTTAGATCAATGGTCTCAAAAAGTTCCATCAATTTTTCATACTCCCAATCATTGAGTTATTCAGATATCCGCATCAAAGCAATACTGCGAAGTTCAAATGGAAAATCTCGGTATGCTGAAGAAGCAGATAATAATAGTGTTCCAGTTCCAAATACCGTTCTCACAGAAAAGCCTAAATGCAATAACAATGATTTGGAACCAAAAGTCTCAACTCCTCGAAGCAAGATGGTTACATCATCGGACCAAAACTTTAGAGTCTCATTGGGTCGTCACAGAAGAAGGATGTCTGATTTGATCTAA	1887	0.4165	MPVPNGEEQILLPENASEVSKSLDLNSDSVDGSPPVSTVYTDVGVVPEHQNNELHHLISNSEIGEIEELRLKQKKLDKKRKEALSKILDIKGSIRVFCRIRPNLIVDKRRISEPVSAGPENVRVKMGGTRKDFEFDKVEPILRSAMDGHNVCVFAYGQTGTGKTFTMDGTNEEPGIIPRALEELFRQASLDNSSSFTITMSMLEVYMGNLRDLLAPRPSGRPHEQPMTKCNLNIQTDPKGLIEIEGLSEVQISDYAKAKWWYNKGKRFRSTSWTNVNEASSRSHCLTRISIFRRGDDLEAKGEVSKLWMVDLGGSERLLKTGARGLTLDEGRAINLSLSALADVVAALKRKRCHVPYRNSKLTQILKDSLGYGSKVLMLVHISPSEEDVCETVCSLNFAKRARAIESNKEVPAEVKKQREKKIMELEEDIEEAEKQCQNLREQIQKIELKLNESKKLLSTAYNLVESDDITSISPKDDLKDVIETPKASKKTIKRNFSNSMPRFMTSTVASRQRKSAAERDISTVRLKSFRSMVSKSSINFSYSQSLSYSDIRIKAILRSSNGKSRYAEEADNNSVPVPNTVLTEKPKCNNNDLEPKVSTPRSKMVTSSDQNFRVSLGRHRRRMSDLI	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g1808	628	PANTHER	KINESIN-LIKE PROTEIN KIN-14D ISOFORM X1	26	623	-	-
	Aed8g1808	628	MobiDBLite	consensus disorder prediction	588	611	-	-
	Aed8g1808	628	Gene3D	Kinesin motor domain	88	451	IPR036961	-
	Aed8g1808	628	Coils	Coil	66	86	-	-
	Aed8g1808	628	Coils	Coil	416	457	-	-
	Aed8g1808	628	ProSiteProfiles	Kinesin motor domain profile.	93	405	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed8g1808	628	PANTHER	KINESIN-LIKE PROTEIN KLP-3	26	623	-	-
	Aed8g1808	628	Pfam	Kinesin motor domain	133	405	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed8g1808	628	PRINTS	Kinesin heavy chain signature	274	291	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed8g1808	628	PRINTS	Kinesin heavy chain signature	306	324	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed8g1808	628	PRINTS	Kinesin heavy chain signature	355	376	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed8g1808	628	PRINTS	Kinesin heavy chain signature	148	169	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed8g1808	628	SMART	kinesin_4	91	413	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed8g1808	628	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	93	447	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g1808	Aed-Chr8	22844725	22848771	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g1808	52	405	Calmodulin-binding Proteins	AT5G65930	37.701	5.36e-65	230

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g1808	-		-	gmx:100785581	1070.84

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed8g1808	8	22844725	22848771	Aed8g1808	8	22844725	22848771	ECH