Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1792 ATGCATTGCAGGGAAGATAAGAAAAGCCATGCTAATAAATCCAAGAAAGCTTCAACGGCCGGATCTTCTTCTTCTGATCGTAAACCCAGGAGGCTAACATCTATGTTCTCTTTCTCCTCTTCTGCCCATGACTTGAGGCATTTGGAATTGGAGCATGAGAAAGACACAACATCACCAAGAGGAGTCTTAGAAGCCTACATGAAAGGCTTTGACCCTCACGAACACGAACACGACCATGAACACGACCATGACCACGACCAAACACATTATGAATCGGAAGTCACTTGTCCAAGCACGAGGTCACACTCTCACTGGACCAAATTCTTCAAACTTTGGAAGACAAAATCTTTCAAGCGCCTAGGCTCCCTCCACCCTCTTGGTGTGCCAAAGATTCCAAAGTGGAAAAGCAGAAGCACCAGAGAAAACCAAGTTCTTAGTAACCTATACAACTTCAAGACTTCTTGGGTCACTTTCAGCCTCTCTGAACTCAGAAATGCAACCAACAATTTCAACACTGTGAATATAATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAGGGGTGTCTCCATGATGGGCAATTAATAGCTGTGAAGAGATTGACCAAAGGGACCACAGATGAAAAAACTTCAGGCTTTCTATCTGAGCTTGGTGTAATTGCTCATGTTGATCATCCTAACACTGCCAAGCTAGTTGGATGTTGTGTAGAAGGAGAAATGCAACTTGTCTTTGAACTATCTCCACTCGGAAGTTTAGGATCTCTTCTTCATGGCTCCATCAATATATGTGATTTTGGGCTTGCAAAATGGTTACCAGAACAATGGACTCACCATAATGCAAAACCATTGCTTGACGCTAATCATTTCAAGGACCTTGTTGATCCTTCTCTTGGCCGTGATTATGAACGAGGACAGTTGGGTTGTTTTGTTTTGACTGCATCAATGTGTATTGAGCAATCTCCTATCTTACGCCCCCGCATGAGTCAGGCAAGTACGATAATTGTGACACTGCTAAGAGGAGAAGACCATGTTCTGAAACATACAAAATCAAGCCGAAGGAGGCCTCTCCAAAGAACATACTCAGAAGAGCTATTGGACGTGCAAGAATACAACTCAACAAAATATCTAAGAGATCTCAAGCGGACTGAGCAGGTTGCATTCGGTAAATGA 1167 0.4319 MHCREDKKSHANKSKKASTAGSSSSDRKPRRLTSMFSFSSSAHDLRHLELEHEKDTTSPRGVLEAYMKGFDPHEHEHDHEHDHDHDQTHYESEVTCPSTRSHSHWTKFFKLWKTKSFKRLGSLHPLGVPKIPKWKSRSTRENQVLSNLYNFKTSWVTFSLSELRNATNNFNTVNIIGRGGFAEVYKGCLHDGQLIAVKRLTKGTTDEKTSGFLSELGVIAHVDHPNTAKLVGCCVEGEMQLVFELSPLGSLGSLLHGSINICDFGLAKWLPEQWTHHNAKPLLDANHFKDLVDPSLGRDYERGQLGCFVLTASMCIEQSPILRPRMSQASTIIVTLLRGEDHVLKHTKSSRRRPLQRTYSEELLDVQEYNSTKYLRDLKRTEQVAFGK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1792 388 MobiDBLite consensus disorder prediction 72 96 - -
Aed8g1792 388 MobiDBLite consensus disorder prediction 72 91 - -
Aed8g1792 388 SUPERFAMILY Protein kinase-like (PK-like) 157 335 IPR011009 -
Aed8g1792 388 MobiDBLite consensus disorder prediction 15 34 - -
Aed8g1792 388 ProSiteProfiles Protein kinase domain profile. 170 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g1792 388 PANTHER OS08G0249100 PROTEIN 35 258 - -
Aed8g1792 388 PANTHER OS08G0249100 PROTEIN 279 383 - -
Aed8g1792 388 Pfam Protein tyrosine and serine/threonine kinase 173 256 IPR001245 GO:0004672|GO:0006468
Aed8g1792 388 ProSitePatterns Protein kinases ATP-binding region signature. 176 198 IPR017441 GO:0005524
Aed8g1792 388 Gene3D Phosphorylase Kinase; domain 1 131 244 - -
Aed8g1792 388 MobiDBLite consensus disorder prediction 1 34 - -
Aed8g1792 388 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 35 258 - -
Aed8g1792 388 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 279 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1792 Aed-Chr8 22731367 22733694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1792 134 257 Receptor kinase-like Gene Family AT1G53420 42.857 1.02e-22 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aed8g1792 PK_Tyr_Ser-Thr 3.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1792 - - gmx:100781529 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2507 2 27757697 27766818 Aed8g1792 8 22731367 22733694 ECH
Aed8g0776 8 6621416 6625443 Aed8g1792 8 22731367 22733694 ECH
Aed4g1868 4 22751409 22759169 Aed8g1792 8 22731367 22733694 ECH
Aed8g1792 8 22731367 22733694 Aed8g1792 8 22731367 22733694 ECH
Aed2g2507 2 27757697 27766818 Aed8g1792 8 22731367 22733694 PCT