Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1782 ATGAATTACTCTAATCATCGTCGCTCTTTTCAAAATGGAGGAATCTACTGTTTCCTTCTGTTCCTCTTCCTCTTTCCTTTTGCGGCGGCACAGTCTAACCAGAACCAATCGCAGAATTACAACAAGTTCAGCCCTTCCATGGCGATCATAATCGTGATCCTCATCGCCGCGCTCTTCCTCATGGGCTTCTTCTCCGTCTACATCCGCCACTGCTCCGGCTCCCCCTCCGCCAGCATCCGCAACCTCACCGGCGCCGGCGGCGGGCGAAATTCTCGCGGTCTCGACCAGGCGGTCATCGACACTTTCCCCACGCTGGAGTACTCCGTGGTGAAGATCCATAAACTCGGAAAGGGAACGCTGGAATGCGCGGTGTGCTTAAACGAGTTCGAGGAAACCGAAAAGCTGCGTTTGATCCCAAAGTGCGACCACGCGTTCCACCCCGATTGCATCGACGAGTGGCTATCTTCCCACACCACTTGCCCTGTGTGCCGCGCCAACCTCGTCCCCCAGCCCGGCGAGTCCGTCCACGGAATCCCCATCCTCGACATCGAGGCCCAACACGAAGCCCAAGACCAGGTCCAAAAGGACGCCGTCGAGCTCGAACAACAACAACAGCAAGACCCTCAGCCTCAGCCTCAAGTGCTGCCGCTAAACCAGACGCTGAACCGGAACCGTACTAGAGGCTCCCGGTCGGGCAGGTCACGGCGGTTTCCGCGGTCTCACTCGACCGGTCATTCTTTAGTCCAACCGGGCGAAGACACTGAACGGTTCACTTTGCGTCTGCCCGAGGAAGTTAGAAAGAAGATACTGCAGAACCCGCAACTGCATCGCGCGAGGAGCTTGGTTATCTTACCGAGAGAAACTAGTTCGCGGCGGGGATATCGAACCGGTGAAGGAAGTAGCAGAGGGGGGCGGTTGGACCGGGGGTTTAAGTCGGACCGGTGGATTTTCACCATGGCGCCACCTTTCTTAGTGAGAGCGTCGTCCGTTAGATCGCCCAGGGTGGCCAATAACGGCGGCGAAGGAACCTCCGCTTCTGCGCCATTGCCGCCGGCGCCGGCTACTGTAGATTCTGTTTGA 1080 0.5759 MNYSNHRRSFQNGGIYCFLLFLFLFPFAAAQSNQNQSQNYNKFSPSMAIIIVILIAALFLMGFFSVYIRHCSGSPSASIRNLTGAGGGRNSRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEETEKLRLIPKCDHAFHPDCIDEWLSSHTTCPVCRANLVPQPGESVHGIPILDIEAQHEAQDQVQKDAVELEQQQQQDPQPQPQVLPLNQTLNRNRTRGSRSGRSRRFPRSHSTGHSLVQPGEDTERFTLRLPEEVRKKILQNPQLHRARSLVILPRETSSRRGYRTGEGSSRGGRLDRGFKSDRWIFTMAPPFLVRASSVRSPRVANNGGEGTSASAPLPPAPATVDSV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1782 359 Pfam Ring finger domain 121 164 IPR001841 -
Aed8g1782 359 SUPERFAMILY RING/U-box 115 171 - -
Aed8g1782 359 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 306 - -
Aed8g1782 359 Coils Coil 183 206 - -
Aed8g1782 359 MobiDBLite consensus disorder prediction 188 255 - -
Aed8g1782 359 SMART ring_2 122 163 IPR001841 -
Aed8g1782 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 170 IPR013083 -
Aed8g1782 359 MobiDBLite consensus disorder prediction 333 359 - -
Aed8g1782 359 MobiDBLite consensus disorder prediction 196 227 - -
Aed8g1782 359 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Aed8g1782 359 CDD RING-H2_PA-TM-RING 121 164 - -
Aed8g1782 359 PANTHER RING FINGER DOMAIN-CONTAINING 18 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1782 Aed-Chr8 22678169 22679248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1782 1 345 Rapid Response to Elicitors AT3G05200 47.765 1.55e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1782 K10664 - gmx:100810865 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1782 8 22678169 22679248 Aed8g1782 8 22678169 22679248 ECH
Aed2g2491 2 27648694 27649779 Aed8g1782 8 22678169 22679248 PCT