Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1777 ATGGATCATCAAGGGCATGGGCAGAACCCATCAATGGGGGTTGTGGGAAGTGGACCTCAACTTTCTTATGGTTCTAATCCATACCAGGCCAGCCATATGACAGGTTCACCTGGGATGGTTGTTGCATCATCTGGGACCATTCAATCCACAGGTCAACCAGCTGCAACTCAGCTAGGACAACATCAACTCGCTTATCAGCACATGCATCAGCAACAGCAGCAGCTGCAGCAACGGCTCCAAGCTTTTTGGGCAAACCAATACCAAGAAATTGAGAAGGTGACTGATTTCAAGAACCACAGCCTTCCCTTGGCGAGGATCAAAAAGATCATGAAGGCCGACGAGGATGTTAGAATGATATCGGCTGAGGCACCAGTAATATTCGCAAGGGCGTGTGAGATGTTCATATTGGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGGACACTTCAGAAGAATGACATTGCAGCAGCCATCACTAGAACTGATATATTTGATTTCTTGGTTGACATTGTGCCCAAGGAGGACTTGAAAGATGAAGTGCTTGCATCAATGCCAAGAGGAACTGTGCCTGTTACAGGACCTGCTGATGCACTTCCTTATTGCTATATGCCACCTCAACATGCACAGCAAGTTGGAGCTGCTGCTGGTGTTATGATGGGTGGTAATAAGCCTGTGATGGACCCATATGCTCAACAGTCTCATCCCTACAACATGGCACCACAAATGTGGTCACAACCACTACCACCAGAACAGCAACAATCATCTCCAGATCAGTAG 792 0.471 MDHQGHGQNPSMGVVGSGPQLSYGSNPYQASHMTGSPGMVVASSGTIQSTGQPAATQLGQHQLAYQHMHQQQQQLQQRLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPKEDLKDEVLASMPRGTVPVTGPADALPYCYMPPQHAQQVGAAAGVMMGGNKPVMDPYAQQSHPYNMAPQMWSQPLPPEQQQSSPDQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1777 263 SUPERFAMILY Histone-fold 36 172 IPR009072 GO:0046982
Aed8g1777 263 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 100 163 IPR003958 -
Aed8g1777 263 Gene3D Histone, subunit A 63 178 IPR009072 GO:0046982
Aed8g1777 263 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 263 - -
Aed8g1777 263 MobiDBLite consensus disorder prediction 239 263 - -
Aed8g1777 263 MobiDBLite consensus disorder prediction 10 28 - -
Aed8g1777 263 MobiDBLite consensus disorder prediction 1 28 - -
Aed8g1777 263 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 263 - -
Aed8g1777 263 MobiDBLite consensus disorder prediction 233 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1777 Aed-Chr8 22622688 22623479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1777 1 209 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.986 1.25e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aed8g1777 CBFD_NFYB_HMF 5.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1777 K08066 - gmx:100785287 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1777 8 22622688 22623479 Aed8g1777 8 22622688 22623479 ECH
Aed2g2486 2 27615518 27618230 Aed8g1777 8 22622688 22623479 PCT