Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1745 ATGGATCAAGCGCGATCGGCGAACGGCGAGGAGAATGCGCCGGGAATTCCGGACGATTTGCGTTGCAAGAGGTCCGACGGTAAGCAGTGGCGGTGCACGGCAATGTCGATGCCGGACAAGACGGTTTGCGAGAAGCACTACATCCAGGCCAAGAAGCGCGCCGCGAATTCCGCAATGCGAGCCAACCTCAAGAAAGCCAAGAGGAAGTCGCAGTCGCTGTCGCTGAACGGGTCCGACAACGTTTATTTGGATAACAAGAGCGACGATTTCGACCTTCCGCTTTCCTCCATCGGCCTCTCGCATAAGAAGCTCTCCAAGAACCAGTTCCGCTACACGCCCGACGCGCGAAGAGGCTCGTCTGCTGGACGCGCTTCCAACCTCAACGATGATGATGATGACGAAGATGACGACGATGATGACGTGGATGCGGATGCCGATGCGGACGCTGATGTGGCGCTCTATGAAGAAGAGAATTGGGCTTCCTATGATTCCCCGCCGGATTCTTCGCGCAAGAGGTCGCGGAGGAGCTTGGAAGCTAATGCCACCACTGTTAGTTGCTGTTTGAGTTTTGTTTTTGATGCTAGTGTAGTTTACTGTGCTGAATTTGGAAGGTCGTGTTGTGTTGTATGGCAGGAATATTCCGATGGAACCTCCGGATCGTCCGACGAGGACACTGGCGGGCAGTCTTGTCACCAGTGCCGGAGGAATGACCGCGACCAAGTTACTTGGTGTCAACGGTGTGATCGGAGGGGATATTGTGATAGCTGCTTATCAACCTGGTACTCAGACTTTTCTTTGGAGGAAATTCAGAGGACATGTCCTGCTTGCCGGGATAAGTTACAATATCTCCACGTGCTGCTGTCGTCAGTGCTTCCTGTGGTAAAGCAGATCCACCATGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAACTAGATCTTCCAAGGATAAAATTGAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATCACTGATTATCATCGGCGCTGTCCAAATTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCACAATAAAGAACCACAAACAGAGCAAGCAAAAACTTCTGATCAAAATATATTAAGTAAATTTCCACATTGGAGATCCAATGACAACGAAAGTATTCCATGTCCCCCAAAGGAGTATGGTGGCTGTGGTTATTCTTCATTAAATTTAAGCCGAATTTTCAAGATGAACTGGGTTGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGGTGCAGAATTAGTAATGCTGATGGTCCACCAGAAACCAGACTGAATGATCTCAGACTTTGCCAATATTCTCATAGAGAAGCCAGTGACGATAATTATCTTTATTGTCCATCATCGGACGATATTAAAACTGATGGGATTGGCAATTTTAGAAAGCACTGGAAAACTGGTGAGCCCATTATTGTCAAGCAAGTATTTGATGGGTCATTCATTTCTAGCTGGGATCCAATGGTCATTTGGAGAGGGATTTTAGAGACAACAGATGAGAAAGCCAAAGATGAAAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATTGAGCTTGCTCAGTTCATGAATGGATACTTCGAAGGGCATAATCGTGAAAATGGTTGGCCACAGTTATTGAAATTGAAGGATTGGCCTTCACCTAGTGCTTCTGAAGAATTTCTATTGTACCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATATCATATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGCTGAAGGACCGGCAGAGAACTAAAACTGATATGATGCAAGAAGCTAAAACTAATAAGGAATCTGAGGCAAAAGAATCACATGGGGATACTCAAATATCTTCAAGGGGGAGTTCACCTGATTCCTCCTCACTTGGTACAAAAAGTAGTGGACTGGATATGGATTCCAACCAGAATAAGTCAATTATGGATCAAGGGTTTGAAATTTATTCTAGTTCTGAAGGTAATATGGCCAATGGTAAACTTCCATTTACCCAAAATGGAGATATCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTCCGTCAGCAGGATGTTCCAATATTGACTAAATATTTAAAAATACATTGGAAGGAATTTAGGAAGTCAGATGATCTAGGAAATGAATTTGTTGAATGGCCTTTTTATGATGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTGTATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCAATGTACAGTTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGTGTTGCTGTAAGATTGGCAGAGGAAATTCGCTGTATACCTAATGAACATGACGCAAAGCTTCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTACAAAAACTTGTACTTGACCCAAAACTTGGCGCCGAGGTCGGATATGGAGACCCTAATTTGACTGCAATGGTGTCCGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTACTTGA 2838 0.4412 MDQARSANGEENAPGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLSLNGSDNVYLDNKSDDFDLPLSSIGLSHKKLSKNQFRYTPDARRGSSAGRASNLNDDDDDEDDDDDDVDADADADADVALYEEENWASYDSPPDSSRKRSRRSLEANATTVSCCLSFVFDASVVYCAEFGRSCCVVWQEYSDGTSGSSDEDTGGQSCHQCRRNDRDQVTWCQRCDRRGYCDSCLSTWYSDFSLEEIQRTCPACRDKLQYLHVLLSSVLPVVKQIHHEQCFEVELEKKLRGAELDLPRIKLNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLNCCRDLREATADHNKEPQTEQAKTSDQNILSKFPHWRSNDNESIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNADGPPETRLNDLRLCQYSHREASDDNYLYCPSSDDIKTDGIGNFRKHWKTGEPIIVKQVFDGSFISSWDPMVIWRGILETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMNGYFEGHNRENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTNEVKLKDRQRTKTDMMQEAKTNKESEAKESHGDTQISSRGSSPDSSSLGTKSSGLDMDSNQNKSIMDQGFEIYSSSEGNMANGKLPFTQNGDISEKTHPGVLWDVFRQQDVPILTKYLKIHWKEFRKSDDLGNEFVEWPFYDGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAVFVPAGCPFQARNVQSNVQLGLDFLSPESLGVAVRLAEEIRCIPNEHDAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEVGYGDPNLTAMVSENYEKMVKRRQITCT 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1745 945 ProSiteProfiles Zinc finger RING-type profile. 230 277 IPR001841 -
Aed8g1745 945 Pfam WRC 17 57 IPR014977 -
Aed8g1745 945 Coils Coil 56 76 - -
Aed8g1745 945 MobiDBLite consensus disorder prediction 668 694 - -
Aed8g1745 945 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Aed8g1745 945 MobiDBLite consensus disorder prediction 68 82 - -
Aed8g1745 945 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 934 IPR045109 GO:0032454|GO:0033169
Aed8g1745 945 SMART cupin_9 585 875 IPR003347 -
Aed8g1745 945 MobiDBLite consensus disorder prediction 695 722 - -
Aed8g1745 945 MobiDBLite consensus disorder prediction 155 174 - -
Aed8g1745 945 MobiDBLite consensus disorder prediction 128 143 - -
Aed8g1745 945 Pfam JmjC domain, hydroxylase 761 854 IPR003347 -
Aed8g1745 945 MobiDBLite consensus disorder prediction 108 143 - -
Aed8g1745 945 MobiDBLite consensus disorder prediction 668 722 - -
Aed8g1745 945 MobiDBLite consensus disorder prediction 58 82 - -
Aed8g1745 945 PANTHER JMJC DOMAIN PROTEIN JMJ24 8 934 - -
Aed8g1745 945 MobiDBLite consensus disorder prediction 1 22 - -
Aed8g1745 945 SUPERFAMILY Clavaminate synthase-like 487 876 - -
Aed8g1745 945 Gene3D Cupin 466 884 - -
Aed8g1745 945 ProSiteProfiles JmjC domain profile. 578 875 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1745 Aed-Chr8 22444636 22453155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1745 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.46e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed8g1745 JmjC 3.9e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1745 K15601 - gmx:100792166 1626.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1745 8 22444636 22453155 Aed8g1745 8 22444636 22453155 ECH