Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1744 ATGGCGGAAACGCGTGAAGACAAACCGAAAGAAAACGTTCGTAAAGAAGAAGAAGAAGAGGACCAAAGCTTCGAAGAGCTCGGCGTGGACGCTCGTCTCCTTCGCGCCTTACTCAAGAAAGAGATCGAGAAACCCACTCCAATTCAGCGCGTCGCGATTCCACTCATTCTAGAAGGTAAGGACGTGGTTGCACGCGCCAAAACAGGTTCGGGAAAAACTTTAGCGTACCTTCTCCCGTTGCTTCAGAAACTGTTCACTGCTAATGCTGATCGGAAGAAGCTCGCGCCCAATGCTTTTGTTCTCGTCCCTACTCGCGAACTGTGTCAACAGGTATATGCGGAAGTGTTGTCGCTGGTTGAGCTGTGCAAAGTTCAACTGAAAGTTGTGCAGTTGAATAGCAACATGCTTGCCAATGACATGCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGCTTAGCAAAGTGTTTGTCCAGTGGTGCACTTCAGGCGGCATCCATTAATGCATCTCTCGAAACTCTTGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGATATAAAAGCTTTTACACCTCACGTACCCAGAAGTTGTCAGTGTCTTCTCATGTCAGCAACATCAAGCACGGATGTGGACAAACTAAAGAAGTTGATTCTACACAACCCCTTTATTTTGACTTTGCCTGAAGTGGGAAATCATAAGGATGAGATCATTCCTAAAAATGTTCAGCAATTCTGGATCTCATGTCCTGCCAGTGATAAATTACTTTACATCCTTGCTGTGTTGAAATTGGGGTTGGTCCAAAAGAAAGTTCTAATATTCACGAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGAATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCAGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTAATGTTGGATCAAGGAAGTCTAGAAAACATGCTAAAATAAAATTAGATTCTGAATTTGGAGTTGTGAGGGGAATTGACTTTAAAAATGTATACACGGTTTTAAACTTTGAAATGCCTCAAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTACTTCTGTCTCTCTGGTTTCTCCGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATAAAAACAAAGGCACAAATTCCATTGCTGAGTTTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGATACAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGATTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCTCACTTCGAAACTAATCCAAAAGACCTAGATCTACTGAAGCATGACAAAGTTTTGAGCAAGCATGCCCCACCTCCTCACCTACGTGATGTGCCTGAGTACCTATTAGACAAACCAACAAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAACAATAACAATCGCCGCAAGGGATCCAACAAGAGAAAATCAAGAAAAGATGGAGACCCTCTGAAGGCTATCTCTGCTATGGCATCAAAAGGACCGCACAAAGCTAGGAAGACTGGTGGAAGAGGTGGCAACAATAGTGGTGATAGACATAAACGCAAAAAGAACAAGGCTCAATTTGATTGA 1815 0.4248 MAETREDKPKENVRKEEEEEDQSFEELGVDARLLRALLKKEIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTANADRKKLAPNAFVLVPTRELCQQVYAEVLSLVELCKVQLKVVQLNSNMLANDMRAALAGPPDILISTPACLAKCLSSGALQAASINASLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSTDVDKLKKLILHNPFILTLPEVGNHKDEIIPKNVQQFWISCPASDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVGSRKSRKHAKIKLDSEFGVVRGIDFKNVYTVLNFEMPQSVAGYVHRIGRTGRAYNSGTSVSLVSPDEMDTLEEIRSFVGDDKNKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRDSRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKVLSKHAPPPHLRDVPEYLLDKPTKEAREMVKLARDAMGNNNNRRKGSNKRKSRKDGDPLKAISAMASKGPHKARKTGGRGGNNSGDRHKRKKNKAQFD 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1744 604 Gene3D - 1 236 IPR027417 -
Aed8g1744 604 PANTHER RNA HELICASE 8 545 - -
Aed8g1744 604 SMART helicmild6 291 405 IPR001650 -
Aed8g1744 604 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Aed8g1744 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Aed8g1744 604 CDD DEADc_DDX56 29 236 - -
Aed8g1744 604 Gene3D - 239 444 IPR027417 -
Aed8g1744 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Aed8g1744 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 430 IPR027417 -
Aed8g1744 604 MobiDBLite consensus disorder prediction 1 23 - -
Aed8g1744 604 SMART ultradead3 41 254 IPR014001 -
Aed8g1744 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Aed8g1744 604 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 8 545 - -
Aed8g1744 604 CDD SF2_C_DEAD 251 414 - -
Aed8g1744 604 MobiDBLite consensus disorder prediction 539 604 - -
Aed8g1744 604 Pfam Helicase conserved C-terminal domain 262 405 IPR001650 -
Aed8g1744 604 MobiDBLite consensus disorder prediction 1 17 - -
Aed8g1744 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 235 IPR027417 -
Aed8g1744 604 Coils Coil 475 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1744 Aed-Chr8 22437839 22443562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1744 23 445 Eukaryotic Initiation Factors Gene Family AT3G19760 24.823 1.88e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1744 K14810 - gmx:100800749 1043.11