Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1729 ATGGCTTATCTTTCGGATATGGATAACAGTCATGGGTATTTTGGAACATACCCTTTCGGGAAAATGACATGTCACGCGACGTTTCCTCATTCATATACACAAGCAATGTCACGTGTCGCAACTTCACCCGTAATCCCAGAAATTGCGGGCCCCACATGTACGGGGAGCCTTATCTCTAGGAGAATCCAGATCCAAAAGCCACGTCACTCACGCCACGTGGTTCCCGATGGAATCGACGGTCCAGATCTTGAAAAACGTCACACTCTTGTTACCATGGGCCTCCTCGATCACTTGTGGGACGACACCGTCGCCGGACCTCGCCCGGAGAACGGCCTCGGCAAACTCCGAAAGCACCACACCTTCGCTTTCCGATCTGCCTCCGCCGCCAAGGAATCAGACAGCGGAAGCGTCAAATCGTACGGTGAGGATACACCGGAAAATGCGGTGAGAGTGACGCGAAGTATCATGATCGTAAAACCACCTGGAAACCAGAGTCAGAGTGGATCGGTTCCTGCTTCCCCTGCCGGTTCTACTCCTCCGGCTTCCCCCGCCGGTTCTACTCCTCCGGTGTCTCCGTTTTCGGGTAAGGAGCTAGAGAGTCCTTCCGTTTTCGAAGAAGTCTTAAGTGTTGGAGACTTTACGAAATCGAGGTCGTACTATGGTGGTTTAGCGGGTATGGATTGTAAGAAGTCCCGGCTCGGACCCAAGAACATGGATTATGGCTTCCTTCTTTTGCTCCTCTTTTTCGTTCCTCACTCTTCCGGTAAAACCAGCGGAGTGTGTGTTTCTCAAGGAGGTCGTTTTCCTCCCTTCAAATCAGAGGGTAACACTCCCAAAAAGGGTCCTAAAGATTTGACCCTTTGCCGGATTTTTCGCAAAAAGACTTGCTGTGATGTAACCCATACACATTCTGCACTGCTGTCTGTAAGGAAGCTTGGTTCTACTGGGGAAGCTAGCCAAGAGTGCTTGGACTTATGGGAACTGTTGGAATGTTCCATATGCGATCCACGTGTTGGTACTCAGGCTGGACCTCCTGTTATTTGTGCATCTTTATGCGAGAGAATTTATGATGCATGCTCAAATGCTTACTTCTCTATGGATGTTAAAACACAGATTGTAGCACCTTGTGGAGTAAATGACTTTGTATGTGGTAGGGCTGCTGAATGGGTCTCCAATGGTACAGATCTTTGTCTTGCTGCAGGTTTTCGAGTGAAATCATCCGATATTGTACATATTGCCTCAGAAGAAACTCCTTGCTATGGTGATAAAGCAAGTCTAGGTTCTGTTGCTAATTCATGGAAGGCTTCAAAGTTTGAGTTGACTCGGAAAGGTGAGAGCTTGGGGATGTTGGATGATTTCCAGCAATGGGCGAGGGAAATGCCATTCGGGGAAAGAGTTTCTTGGGCTATAGGTGGGATGGTTCTAACAGCAGGCTTGGTGTTTATAAGGAGTTTCCGCATGGTCTTGTTGCTTTGCTCTGTTGAAAAATTACAGCATAAAACCTGCGTTCTTGTTAAACTTTCGGGTATCGATTTGAAGGCCGGAGGTAAGAGCAAAAAGACCAAAAGAACAGCACCCAAGTCCAATGATATCTATCTCAAGCTCTTGGTCAAGCTTTATCGCTTCCTTGTTCGGAGAACTGGCAGCAACTTCAATGCTGTTGTACTCAAGAGATTGTTCATGAGCAAGGTTAACAAGCCCCCATTGTCTTTGTCAAGGTTGATCAAGTATACCAAGGGAAAGGAAGGCAAGATTGCTGTGGTGGTGGGGTCTATAACTGATGACATCCGTGTTTATGAAGTTCCACCCATTAAAGTTACTGCACTCAGGTTTACAGAGACTGCTCGTGCAAGAATTGAGAAGGCAGGAGGTGAATGCTTGACGTTTGACCAGTTGGCTCTCAGGGCTCCTCTGGGACAAAACACGGTCCTTCTTAGAGGCCCTAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCCTGCTCCTGGTGTGCCTCACAGCCACACCAAGCCTTATGTTCGGGCAAAGGGAAGGAAGTTTGAGAGGGCTAGAGGAAGGAGGAAGAGCAGAGGATTTAGGGTTTGA 2085 0.4806 MAYLSDMDNSHGYFGTYPFGKMTCHATFPHSYTQAMSRVATSPVIPEIAGPTCTGSLISRRIQIQKPRHSRHVVPDGIDGPDLEKRHTLVTMGLLDHLWDDTVAGPRPENGLGKLRKHHTFAFRSASAAKESDSGSVKSYGEDTPENAVRVTRSIMIVKPPGNQSQSGSVPASPAGSTPPASPAGSTPPVSPFSGKELESPSVFEEVLSVGDFTKSRSYYGGLAGMDCKKSRLGPKNMDYGFLLLLLFFVPHSSGKTSGVCVSQGGRFPPFKSEGNTPKKGPKDLTLCRIFRKKTCCDVTHTHSALLSVRKLGSTGEASQECLDLWELLECSICDPRVGTQAGPPVICASLCERIYDACSNAYFSMDVKTQIVAPCGVNDFVCGRAAEWVSNGTDLCLAAGFRVKSSDIVHIASEETPCYGDKASLGSVANSWKASKFELTRKGESLGMLDDFQQWAREMPFGERVSWAIGGMVLTAGLVFIRSFRMVLLLCSVEKLQHKTCVLVKLSGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPPLSLSRLIKYTKGKEGKIAVVVGSITDDIRVYEVPPIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRRKSRGFRV 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1729 694 MobiDBLite consensus disorder prediction 127 141 - -
Aed8g1729 694 Pfam Ribosomal protein 60S L18 and 50S L18e 509 694 IPR021131 -
Aed8g1729 694 MobiDBLite consensus disorder prediction 125 145 - -
Aed8g1729 694 Gene3D - 508 694 - -
Aed8g1729 694 Pfam Folate receptor family 273 400 IPR018143 -
Aed8g1729 694 PANTHER OS02G0592500 PROTEIN 242 494 - -
Aed8g1729 694 MobiDBLite consensus disorder prediction 159 197 - -
Aed8g1729 694 Pfam Dormancy/auxin associated protein 98 179 IPR008406 -
Aed8g1729 694 MobiDBLite consensus disorder prediction 159 175 - -
Aed8g1729 694 PANTHER OS02G0592500 PROTEIN 242 494 - -
Aed8g1729 694 SUPERFAMILY Ribosomal proteins L15p and L18e 527 646 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1729 Aed-Chr8 22302967 22320228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1729 510 694 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 77.419 7.36e-96 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1729 - - gmx:100795095 480.715