Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1716 ATGTCGTATCGCCCAAGCGGGAACTCCAGGACCGAGGTCCGCCGGAACCGGTACAAGGTGGCGGTGGACGCGGAGGAAGGTCGGAGACGGCGAGAAGACACCATGGTGGAGATCCGCAAGAACCGCAGAGAAGAGAGTTTGCAGAAGAAGAGGCGCGAGGGCCTTCAACCTCAGCAGATGCCTGCGTCCGTTCACTCTACTTTGGTAGAGAAGAAGTTGGAACACCTACCGTCTATGGTTACTGGTGTGTGGACTGATGATAATAATCTGCAGCTCGAGGCGACGACGCAGTTTCGGAAGCTGCTTTCGATTGAACGCAGTCCGCCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGGTTTGTCGAATTTCTTATGAGGGAAGACTTTCCGCAGTTGCAGGCTAGTACTTGTCTATTATTTTTTGAGGCTGCTTGGGCTTTGACAAATATAGCTTCTGGGACGTCTGAAAACACCAAGGTTGTGATTGATCACGGGGCTGTCCCGATTTTCGTGAAGTTACTTGCTTCTCCCAGTGATGATGTCCGTGAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGTCGTGATCTTGTTCTCGGTCATGGGGCTTTGCTTCCTTTGTTGGCCCAATTAAATGAGCATGCCAAGCTTTCTATGCTTAGAAACGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGACCAGGTTAAACCTGCACTACCTGCTCTTGCCCGTCTTATCCATTCAAATGATGAAGAAGTATTGACTGATGCATGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCCGTAATTGAAGGTGGTGTTTGTCCCCGGCTTGTTGAGCTGCTACTGCACCCATCCCCTTCAGTGTTAATTCCTGCTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATACGCAAACTCAGGTTATCATCAATCATCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACAATATCAAACATCACAGCTGGTAATAAACAGCAGATTCAGTCTGTGATTGAGGCCAATTTAATTGCTCCTTTGGTCAACCTGCTTCAAAATGCTGAGTTTGATATTAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCCCATGAACAAATCAAGTTCCTAGTAAGTCAAGGGTGTATTAAGCCCCTGTGTGATCTTCTTATCTGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAGAACATCCTAAAGGTTGGAGAAGCTGATAAAAATATTGGCAATACTGGTGATGTGAATCTATATGCACAAATGATAGATGATGCTGAGGGGCTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACCGAGATTTATGAAAAGGCAGTCAAGATTCTCGAGACATACTGGTTGGAGGAGGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGCAGCAATGACGCTCCAGCTGTGCCTTCCGGTGGATTCAACTTTAATTAG 1620 0.4648 MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQMPASVHSTLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQASTCLLFFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEGGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDTQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQSVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSNDAPAVPSGGFNFN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1716 539 SUPERFAMILY ARM repeat 14 508 IPR016024 -
Aed8g1716 539 MobiDBLite consensus disorder prediction 509 539 - -
Aed8g1716 539 Gene3D - 74 504 IPR011989 -
Aed8g1716 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 251 293 IPR000225 GO:0005515
Aed8g1716 539 Gene3D - 12 52 IPR036975 GO:0006606
Aed8g1716 539 SMART arm_5 106 154 IPR000225 GO:0005515
Aed8g1716 539 SMART arm_5 156 196 IPR000225 GO:0005515
Aed8g1716 539 SMART arm_5 367 407 IPR000225 GO:0005515
Aed8g1716 539 SMART arm_5 197 239 IPR000225 GO:0005515
Aed8g1716 539 SMART arm_5 282 322 IPR000225 GO:0005515
Aed8g1716 539 SMART arm_5 324 365 IPR000225 GO:0005515
Aed8g1716 539 SMART arm_5 410 450 IPR000225 GO:0005515
Aed8g1716 539 SMART arm_5 241 280 IPR000225 GO:0005515
Aed8g1716 539 PIRSF Importin_alpha 5 538 IPR024931 GO:0005737|GO:0006606|GO:0061608
Aed8g1716 539 PANTHER IMPORTIN SUBUNIT ALPHA 2 529 - -
Aed8g1716 539 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Aed8g1716 539 Pfam Armadillo/beta-catenin-like repeat 198 239 IPR000225 GO:0005515
Aed8g1716 539 Pfam Armadillo/beta-catenin-like repeat 411 448 IPR000225 GO:0005515
Aed8g1716 539 Pfam Armadillo/beta-catenin-like repeat 367 406 IPR000225 GO:0005515
Aed8g1716 539 Pfam Armadillo/beta-catenin-like repeat 283 321 IPR000225 GO:0005515
Aed8g1716 539 Pfam Armadillo/beta-catenin-like repeat 156 195 IPR000225 GO:0005515
Aed8g1716 539 Pfam Armadillo/beta-catenin-like repeat 327 365 IPR000225 GO:0005515
Aed8g1716 539 Pfam Armadillo/beta-catenin-like repeat 252 279 IPR000225 GO:0005515
Aed8g1716 539 Pfam Atypical Arm repeat 465 511 IPR032413 -
Aed8g1716 539 MobiDBLite consensus disorder prediction 40 63 - -
Aed8g1716 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 167 209 IPR000225 GO:0005515
Aed8g1716 539 PANTHER IMPORTIN ALPHA 2 529 - -
Aed8g1716 539 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1716 Aed-Chr8 22212349 22224478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1716 160 429 U-box Gene Family AT1G23030 23.247 2.04e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1716 K15042 - gmx:100789135 1028.47