Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1713 ATGGTTAGGGGAGGAAGGTTTTGTGGCAAACGCAGTTTCAGAAAAAGGGTTCAGTCAAAGGAGGGGGGTTCTGATGATTCGGATGAGGACTATGTGGTCTCAGATGAAGGTAGAGAGGCATCTGACAATTATTGCTCCTCCTTAGATGGATGTGCATCAGAGGAGAGTTTTGATAGTTTTATGGAAGAAGAGGAGGAGGAATCTCGAATCGTGAGGAGTTTCAATAGATCCAAGTCAAAGAAGGGCACTGCTGGTCGGCGGAAAAATGGCAGTAAAAACTCACACAAGAGGGGAAGGATTACATATGCAGAAGAAGAGGAAGAGGAGGAAGAAGAGGTAGAGGAAGAGGAAGAGTACAGAGAAGAAGAAGAGTACAAAGAGGAAGAGGAAGAATACAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAATACAAAGAGGAAGAGGAAGAGGAAATTCAAGAAATGAGGAATTTCAATAGGTCAAAGGCCAAAAATTGTGTATTTGCTAGGAAAAAACGTTCAAGTAAAATCTCCCCAATGAGGAGAAGGAAAATACGTGCAGAACAACTGGAAGAGGGGGAAGAGGAGAAACTGGTGGAGGAGGAAGAGGAGAAACAGGTGGAGAGAATTAGAGATGAGGAAATAGAACAGGTGGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGAGGATGAGGATGATGAATTTTTGCCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAATGAGGGGGAGAAGGAAGAAAAACGATGGCTTGAAAATGGACAAGGTTTTGCAGAAGAAAAGGGCCTCTGTGGTTTCTACCAGAGGTCAGAAAAGGCGGGTTTCTAGGGCATCAAAGAAGCCCTTGAGAAACAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGAAAAATGTGAAGATGAAGATGAAGATGATTTTATAGATAATTGCCCAATCATCAGTACAACGACCAGGAGAAAGCGTGGCCAGAAGAGGAGAAGGGTGCTTCTTTCAGATTCAGATAATGCATCTTCTGGATCATCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGGGAACAGGTGAGAGAAGCCAAGAGATTGTGTGGAAATTTCAGAAATAACTTGAGGAGTTCATCCCATCTAATAAATAACGGAGAGGTTGGTGTCCATGTGGATCAGCATCCGCAGCGGAAGCCTCCAGGTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAGGGAAGAAAGGGTAAGGAAAAGGTGGAGGTTTTAAAAAGTGAGGTGGGAAAGCAAACGTGTGGAATTTGTCTATCTGAAGAAGATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGTACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAGTCTCGCTGCCCTTTATGTAAACAGAGATTCAAAACAATCAGCAAGCCAGCACGGTCGGCAACAGGGATTGATCTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAGGAAGAACTAAGGAGCTATATTGACCCATATGAATATGTTATGTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCCGAAGGTAATTGGTACTGTGATGGATGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCAGATCCAAGGGTATCAGTCCAGAGCCTTCCTGCTAGACCACCCCCTGTTTTACATGTACGAGAAAGTATAGACCTCAACCTGATTTCGTCACCTCGTGCAGCTTTTAATCAAGGTTTTGGGCATCTTCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAAGGAGCTTCTCCCGTATCTGGAGGGGCACCAACTCTATCAGAGAGACGCTGGATACACCGTCAGATTCAACAACTACTTTCAATAGATAGGATGGCTTCTACACCTGGCAGAACCAATGGTATTTCAGCTACTAGTTCAACTAGTAACTTATATAGCACTCAAATTGATCCAAGTAGGGTAACCACCACTCTACCTGTAAGGACACAGGATGTGGGTACATCATACCACACATTTATTGACGAGAGATTATGCAACAACTCCGCTCCATTAATGCAGAATGGGACATTTTGGCCTGGACTTATGGGGACTCCCCCAGTACCAGAATTGGAACAAGTTCATCAGTTCAGCAGATCAAACATTGTTCCTGATGGTGGCTTATCCCCTGCTGTCAGAGAAGAGAGTAACTTTCACTTTGCAAAGGAGCAGTTGCAATCAATGGTTAAAAGCCACTTGAAGAGCTTGTCTCAAAATATTGATTTAGGCCACAATACTATCAAGGATATTGCAAGGAGTTCTATGCACACCATACTAGCAGCCTGTGATCTTGAGCACAAGAAGAGTGAAGTTTGCACCGTGCCTCCGCCATCAGCGTGTCCACACATGGAACTAATGGCTGGCGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAATTTCGTCACAGTGGTTACGATTAGGTCTTTAG 2682 0.44 MVRGGRFCGKRSFRKRVQSKEGGSDDSDEDYVVSDEGREASDNYCSSLDGCASEESFDSFMEEEEEESRIVRSFNRSKSKKGTAGRRKNGSKNSHKRGRITYAEEEEEEEEEVEEEEEYREEEEYKEEEEEYKEEEEEEEEEEEEEEEEYKEEEEEEIQEMRNFNRSKAKNCVFARKKRSSKISPMRRRKIRAEQLEEGEEEKLVEEEEEKQVERIRDEEIEQVGDRDGEDEDFDYEDEDDEFLPEEEDYSDEEEEMRGRRKKNDGLKMDKVLQKKRASVVSTRGQKRRVSRASKKPLRNKRRKNGRLRKKEKCEDEDEDDFIDNCPIISTTTRRKRGQKRRRVLLSDSDNASSGSSDFEFTISEEEREQVREAKRLCGNFRNNLRSSSHLINNGEVGVHVDQHPQRKPPGRKGKEKIEEPQGRKGKEKVEVLKSEVGKQTCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSATGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVMCSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRVSVQSLPARPPPVLHVRESIDLNLISSPRAAFNQGFGHLPSSRFSGRSVEGASPVSGGAPTLSERRWIHRQIQQLLSIDRMASTPGRTNGISATSSTSNLYSTQIDPSRVTTTLPVRTQDVGTSYHTFIDERLCNNSAPLMQNGTFWPGLMGTPPVPELEQVHQFSRSNIVPDGGLSPAVREESNFHFAKEQLQSMVKSHLKSLSQNIDLGHNTIKDIARSSMHTILAACDLEHKKSEVCTVPPPSACPHMELMAGGQTSLIKGCCSSCFDSFVGDVVKRVLDTRISSQWLRLGL 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1713 893 Pfam PHD-finger 534 580 IPR019787 -
Aed8g1713 893 CDD RING-HC_Topors 442 484 - -
Aed8g1713 893 SUPERFAMILY RING/U-box 436 490 - -
Aed8g1713 893 MobiDBLite consensus disorder prediction 254 277 - -
Aed8g1713 893 MobiDBLite consensus disorder prediction 224 253 - -
Aed8g1713 893 MobiDBLite consensus disorder prediction 104 156 - -
Aed8g1713 893 Coils Coil 190 216 - -
Aed8g1713 893 MobiDBLite consensus disorder prediction 14 321 - -
Aed8g1713 893 MobiDBLite consensus disorder prediction 401 428 - -
Aed8g1713 893 ProSiteProfiles Zinc finger RING-type profile. 442 484 IPR001841 -
Aed8g1713 893 MobiDBLite consensus disorder prediction 288 308 - -
Aed8g1713 893 MobiDBLite consensus disorder prediction 75 95 - -
Aed8g1713 893 PANTHER F18C1.6 PROTEIN 1 131 - -
Aed8g1713 893 PANTHER F18C1.6 PROTEIN 127 882 - -
Aed8g1713 893 MobiDBLite consensus disorder prediction 333 364 - -
Aed8g1713 893 Coils Coil 102 171 - -
Aed8g1713 893 MobiDBLite consensus disorder prediction 208 223 - -
Aed8g1713 893 ProSitePatterns Zinc finger RING-type signature. 461 470 IPR017907 -
Aed8g1713 893 ProSiteProfiles Zinc finger PHD-type profile. 532 581 IPR019787 -
Aed8g1713 893 PANTHER F18C1.6 PROTEIN 1 131 - -
Aed8g1713 893 Pfam Ring finger domain 441 484 IPR001841 -
Aed8g1713 893 SMART PHD_3 534 579 IPR001965 -
Aed8g1713 893 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 582 IPR013083 -
Aed8g1713 893 PANTHER F18C1.6 PROTEIN 127 882 - -
Aed8g1713 893 SUPERFAMILY FYVE/PHD zinc finger 505 580 IPR011011 -
Aed8g1713 893 MobiDBLite consensus disorder prediction 392 428 - -
Aed8g1713 893 SMART ring_2 442 483 IPR001841 -
Aed8g1713 893 MobiDBLite consensus disorder prediction 171 186 - -
Aed8g1713 893 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 505 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1713 Aed-Chr8 22197602 22201666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1713 440 487 C3H Transcription Factor Family AT2G39100 41.667 2.09e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed8g1713 PHD 6.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1713 - - gmx:100797448 1313.13