Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1706 ATGGGAAGCAGTAGCAGGAAGAACAAGCAAGATCTGGATTTAGAGAAAGTTCGCTTGATCAGTTTAGCCCACGATTTCGGCTTCGACGAATCCTCCGCAACCAAATGTCTCGACCGTCTCATCGCTCTCTACGGCGAGGACGGCCGCGATTTCATCACCGTTGAGCACTGCGGCGACGATTTTCTCGCGGCGTTGGCGGAGTCGATGCAGGCCGAGGATTGGGATGACCAGCAGGAAATGGAATCGCAAGCGTGCGGAAACCTGACGCACGTGCTCGACAAAACCGTTGACACGTGCGACGATGCTTCGAGAAGAAGCTTCGTTGACATTGCTGACGACTCGCCTCGACCGCAGAGACGCACACGCCACACTAATGTAGTGGAGTTGGGTTCGAGTGACGACGAGGATATGCACTGTAGTGCTTCGAGGGAAAAATCTACGGATTACAGAAGTGGTATCACTCAAGGCTCAGTTTCATCAACTTCCAGCAAAATGCAATCCTCCTCTGCATCAAAGGATAAAAGCAGTACCCTCACTTATGAAGAATTGCAAGCACTAGATGACATTGAACTGGCCAATGTTGTTATCTTTGGTAATAGGGCACTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCTTTTATTCTTATGCCTACTGGGGGCGGTAAATCTCTTTGCTATCAGCTTCCAGCAACACTTCAACCAGGTGTTACAGTAGTTGTATCTCCATTACTTTCACTCATTCAGGATCAGATAATAACACTAAACCTCAAGTTTGCAATACCTGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAGACCACGGCTGTGCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTTTTATATGTGACACCTGAGAGAATTGCTGGCAACCAATCGTTTCTTGAGATTCTAAAATGCATGCATCGGAAGATTATCTACTGTAAATTGAAAATTATGCTTTCCAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCAACACTTTCCAGATGTACCTGTCATGGCATTGACAGCCACTGCAACCCATGCAGTTCGTGAGGACATATTGAATGCGTTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTGATTGGTAAGACAAAGGAGCCACTAAAGCAGCTTGGACAGTTACTAATTGATTGCTTCAGGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAGAGTGAATGTGTTGAGGTATCCAAATTTTTGAATGAGAAGTGCAAGATCAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGCCAGAGAGTAGCCGTTCAAAAGAAATGGCATGATGGGGAGGTCCATATTGTATGTGCTACTATTGCTTTTGGAATGGGGATAGATAAACCTGATGTTCGCTTTGTCATCCACAACACATTGTCAAAATCAATTGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTCCTTCAATTTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGCCAAGGATATAAAAAGGATCGTTTTAAGACAGCAATGGTTCAAGCCAAAAAGATGCAAGAGTACTGTGAATTGAAGGTTGAATGCCGGAGACAAGCATTACTCAAACACTTTGGAGAATCTTTGATAGAAAAGCCTGCAAGTATGGATCTAGCCCCTGTGATAACTGTCTCAAGACTTTATTATGACTTATGA 1809 0.4378 MGSSSRKNKQDLDLEKVRLISLAHDFGFDESSATKCLDRLIALYGEDGRDFITVEHCGDDFLAALAESMQAEDWDDQQEMESQACGNLTHVLDKTVDTCDDASRRSFVDIADDSPRPQRRTRHTNVVELGSSDDEDMHCSASREKSTDYRSGITQGSVSSTSSKMQSSSASKDKSSTLTYEELQALDDIELANVVIFGNRALRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFAIPATFLNSQQTASQTTAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKCMHRKIIYCKLKIMLSSQWGHDFRPDYRGLGSLKQHFPDVPVMALTATATHAVREDILNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKQLGQLLIDCFRNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSICIALYQKKDFSRVVCMIRNGQGYKKDRFKTAMVQAKKMQEYCELKVECRRQALLKHFGESLIEKPASMDLAPVITVSRLYYDL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1706 602 Pfam Helicase conserved C-terminal domain 415 514 IPR001650 -
Aed8g1706 602 Pfam RecQ zinc-binding 527 580 IPR032284 -
Aed8g1706 602 MobiDBLite consensus disorder prediction 109 177 - -
Aed8g1706 602 MobiDBLite consensus disorder prediction 109 145 - -
Aed8g1706 602 PANTHER BLOOM SYNDROME PROTEIN 32 579 - -
Aed8g1706 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 383 IPR014001 -
Aed8g1706 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 383 IPR027417 -
Aed8g1706 602 Gene3D - 391 588 IPR027417 -
Aed8g1706 602 SMART helicmild6 433 515 IPR001650 -
Aed8g1706 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 408 558 IPR001650 -
Aed8g1706 602 CDD DEXHc_RecQ 196 390 - -
Aed8g1706 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 580 IPR027417 -
Aed8g1706 602 SMART ultradead3 198 399 IPR014001 -
Aed8g1706 602 CDD SF2_C_RecQ 391 524 - -
Aed8g1706 602 MobiDBLite consensus disorder prediction 146 177 - -
Aed8g1706 602 Gene3D - 158 390 IPR027417 -
Aed8g1706 602 PANTHER DNA HELICASE RECQ FAMILY MEMBER 32 579 - -
Aed8g1706 602 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 196 585 IPR004589 GO:0004386|GO:0006310
Aed8g1706 602 Pfam DEAD/DEAH box helicase 204 367 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1706 Aed-Chr8 22153618 22158647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1706 338 523 Eukaryotic Initiation Factors Gene Family AT5G11170 26.455 6.50e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1706 K10899 - gmx:100806070 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1706 8 22153618 22158647 Aed8g1706 8 22153618 22158647 ECH