Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1684 ATGGAGACCAAAGAGGAGAGGATGATAATGCTTCCATCGCCATCATCGGAGACCCATGCAGTTGAACAATATTGTTCCCGGCCGAGTGGTGATGACTCCGACACCTTCTATATCAAACTCGCTGACTTGTTGGACCCTTCTGGACTCACTCTCATTTTCAATGTCCGAGAAACATTGCTGGACTTGTACCTGTTTTACTTGGAGGTCACTAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAATGGGGTGAAGTTATATTTGCCCTGAAATTGGAAGGGAATAGTGTAAAGTTATGTGCTCAAGTTGAAAAGCTTTACGCACATCTTCTCTTCCAGTTTGAGCAATTGTACTTCTACAGGCATCCTGCAAAGCAACGTAGATCTAACAGCACCCAAGATGGTCAAAAGGCTACAGAGATGTCAAAGGATTGCCCTTGCCACATGATAGCAGGGGCTGGCTATGTGGAACAGCCTGTGCTTTTGCTGCCGCCCTCGAATGTCAAAGAATCGAAGAAACGCCGAGGCTCTCTGCCGGGACGAAAGACTGCATATCAGATATTCATCAAGCAAGAATGTGCACGATTGAAGACTTGTACTCAGCCATACGTGGAGGAAAGCATGAAGAACAAGGAAGAAGTTAAGGAAGCAATGATTAGTCACAATAAACAGCAGAGAACCCAAGAAACCAGGGAAGATAAGTGGCCTAGTATGTGTGGTGATTATCTTGTAACTTCACAACCTGAGACAAAAAACTCCCTTGTCAATCAAGCAACTATTGGGTTAGCTCTTAAAATGAGTGAAAAAGCACCAAAGGATCCTTCATTTCTAATGGACTGGGGTGCTTATTATTCACTAGATTTTCCAACTAGGGAATCCGAGTAA 888 0.4414 METKEERMIMLPSPSSETHAVEQYCSRPSGDDSDTFYIKLADLLDPSGLTLIFNVRETLLDLYLFYLEVTRRGGYHQVGREKKWGEVIFALKLEGNSVKLCAQVEKLYAHLLFQFEQLYFYRHPAKQRRSNSTQDGQKATEMSKDCPCHMIAGAGYVEQPVLLLPPSNVKESKKRRGSLPGRKTAYQIFIKQECARLKTCTQPYVEESMKNKEEVKEAMISHNKQQRTQETREDKWPSMCGDYLVTSQPETKNSLVNQATIGLALKMSEKAPKDPSFLMDWGAYYSLDFPTRESE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1684 295 SMART ARID_2 27 116 - -
Aed8g1684 295 SUPERFAMILY ARID-like 23 122 IPR036431 GO:0003677
Aed8g1684 295 Gene3D - 15 141 IPR036431 GO:0003677
Aed8g1684 295 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 202 274 - -
Aed8g1684 295 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 2 201 - -
Aed8g1684 295 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677
Aed8g1684 295 ProSiteProfiles ARID domain profile. 30 120 IPR001606 GO:0003677
Aed8g1684 295 SMART bright_3 31 121 IPR001606 GO:0003677
Aed8g1684 295 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 202 274 - -
Aed8g1684 295 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 2 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1684 Aed-Chr8 22003172 22005189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1684 60 139 ARID Transcription Factor Family AT1G76110 34.884 1.84e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed8g1684 ARID 3.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1684 - - var:108325455 345.51