Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1671 ATGGCAGAGCGTGGTGGAGGCGGTGAACGTGGAGACCGTGGAGGTTTCGGTCGCGGCTTCGGGGGACGCGGACGCGGCGGAGACAGGGGCCGCGGCCGTCGCAGAGGCCCCCGCCGCGAGGAGGAGGAGAAATGGGTCCCGGTGACGAAACTCGGAAGGCTTGTGAAAGAGGGAAGAATCCGAAGCCTGGAGCAGATCTACCTCCACTCTCTCCCAATCAAGGAGCACCAAATCATCGACACGCTGGTGGGTCCCACCCTGAAGGACGAGGTGATGAAGATCACGCCGGTCCAGAAGCAGACCCGGGCCGGTCAGCGAACCCGGTTCAAGGCCTTTGTCGTGGTGGGCGACTCCAACGGCCACGTGGGTCTCGGGGTTAAGTGCAGCAAGGAGGTCGCTACTGCGATTCGCGGCGCTATCATTCTCGCGAAGCTTTCTGTTGTTCCCGTGAGGAGGGGATACTGGGGCAACAAGATTGGGAAGCCACACACTGTTCCGTGTAAGGTTACGGGGAAGTGTGGATCTGTTACTGTTAGGATGGTTCCCGCGCCGAGGGGTTCGGGGATAGTGGCGGCTAGGGTTCCCAAGAAGGTGCTGCAGTTTGCTGGGATTGATGATGTTTTTACCTCCTCCAGAGGATCCACCAAGACCCTCGGCAACTTCGTTAAGGCTACTTTTGATTGCTTGATGAAAACCTATGGATTCCTGACACCAGAGTTCTGGAAGGAGACTCGTTTCTCCAAATCTCCATTCCAAGAATACACAGATTTATTGGCAAAACCAACTGGAAAGGCTGTGATCTTGGAGGAGGAAAGGGTCGAAGCTTGA 828 0.57 MAERGGGGERGDRGGFGRGFGGRGRGGDRGRGRRRGPRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTGKAVILEEERVEA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1671 275 ProSitePatterns Ribosomal protein S5 signature. 104 136 IPR018192 -
Aed8g1671 275 Gene3D - 150 243 IPR014721 -
Aed8g1671 275 ProSiteProfiles S5 double stranded RNA-binding domain profile. 87 150 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed8g1671 275 SUPERFAMILY dsRNA-binding domain-like 83 152 - -
Aed8g1671 275 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 273 - -
Aed8g1671 275 MobiDBLite consensus disorder prediction 1 43 - -
Aed8g1671 275 Gene3D - 44 149 - -
Aed8g1671 275 PANTHER RIBOSOMAL S SUBUNIT 1 273 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed8g1671 275 TIGRFAM uS5_euk_arch: ribosomal protein uS5 40 247 IPR005711 GO:0003735|GO:0006412|GO:0015935
Aed8g1671 275 SUPERFAMILY Ribosomal protein S5 domain 2-like 163 243 IPR020568 -
Aed8g1671 275 Pfam Ribosomal protein S5, C-terminal domain 171 243 IPR005324 GO:0003735|GO:0005840|GO:0006412
Aed8g1671 275 Pfam Ribosomal protein S5, N-terminal domain 87 151 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1671 41 263 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.928 1.46e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1671 K02981 - gmx:100810363 479.174