Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1661 ATGTCCAAGACAATTCAAATGCATGGATTCCCATCTAATATGTCAGCTGAAGAGGTGAAGAAATTTATGGAGCAACACACAGGCCACCAAACTGTTCATGCTGTAGAAGTTAGGCAGCATAAAGAAGGAGATCCTACAACAACATATGTTGATGTTCAATTCATAGACAGAAAAAGTGTTGAAACAATCTTGCTCTTAGTTACTCAGCACCTATCTTACAGTGCCTATGTTCTCAATGCTTCTGAAATGAAACATGACATTTTGCCAAAGCCAAGGATCTTTCCTCACAACATGGATGACATAGTAGTGCACTTTGGATGTTTAACATCCAAGGACAAACTTAGTGTACTCTGGGAACATCCAAATGCTTCAGTTAAATTCGGGTCCAGATTGAGAAACATCTATATATTTCTCCATTACTTGAAAATGGATTATAAGCTGCAGATTTCTTCTGAGAGTATATCGTGTATTGAGCTGTGCCATTCAGATGATTTAACCAAGAAAATTCTCCTTTTTCAGTTACGCGGTGCTCCTATGATCTATGAGAAAGATGTTTCTAAAAGCAAATATTTTAAGGAGGCTTGTGACAACCATTGGTTTCGAGGAGTAGATTTCACTCCATCATGCAGCATTGGACAATCTTCTGCTTTATGCTTTGAGCTTCCACAAGGTGTTGAGGTTCCAAAATTCAATCAGCACTATCGTAATTACAACGAAGTTGATGACAGAATCTTTACTCTTGAGAAACACCTTGGTTTCTCTTCTTCTAACCACAATTTTTTCCCCATAATGATCCCTCCAGAAGGCTTCAACTTGCCGTACAAAATATTGTTCAAAATCAACTCATTGATTCAGCATGGATGTCTTCCTGTGCAAGCAATTGACATCAATCTTTTCCATCTTCTTGATCCTAGAAGAGTAAGGATTGAATACATAGAAAGTGCCCTTCATAAATTAGATCAAATGAAAGAATGCTGCTATGAACCTGCACAATGGTTGGAGAAACAGTACAACAAATACTCATCAAATAGTCTAGTTCCAGTGTCTAGTGCTATTTCTTTAGATGATGGGTTGGTCTATGTGCATAGAGTAAAAGTAACTCCTTCCAAAATATACTTTTGTGGTCCTGAAGTGAACCTTTCCAACCGTGTCTTGCGCAACTATCCTGAAGACACTGATAACTTCCTCCGTGTTTCATTTGTTGATGAGGACATGTATAAACTTCATTCAGCTGATCTGGTGCCACGTTCATCGTCTACAGAAGTGGACAGAGAAACAAAGCTTCATGAGAGAGTACTCTCTACACTAAAAGATGGCATAGCAATTGGTGATAAGAAGTTTGAGTTTCTTGCCTTCTCACCGAGTCAATTACGGGATAACTCTGTATGGATGTTTGCACCAAGAACTGGACTTACTGCATCTGATATAAGAAAGTGGATGGGAGAGTTTCATGAAATTAGAAATGTGGCCAAATATGCAGCAAGGCTGGGTCAATCATTCAGCTCTTCCAGGGAAACAGTGAGTGTTGGCAGACATGAAATTGAAATCATTCCTGATGTAGAATTCAGAAGAGGTGAAACCAAATACTGTTTCTCTGATGGCATTGGGAAGATATCTTCTGAATTGGCTAAAGAAGTGGCTGAGAAATGTGGTTGTAGGGATAATAACATTCCATCAGCATTTCAAATCAGATATGGAGGGTACAAAGGTGTTGTTGCTATTGATCCTACTTCGTCAACTAAACTGTCCTTGAGAAAGAGCATGTGCAAGTACAAGTCAGAAAACACAAAATTGGATGTTTTGGCATGGAGCAAATACAAACCTTGTTACCTTAACCGACAAGTAATCACCCTCTTATCCACACTCGGGGTCAAGGATGGAGTCTTCAGAAAGAAACAAAGAGAGAAGGGGAGAAGACCACATCCTAATGAATGTTCAGGAAGTGACTTGGATGGAGATATCTACTTTGTCAGTTGGGACCCCGATCTTATTCCTCCTCGTCAGGAAAATCCAATGGATCATGAACCATCTCAAGTTATGAAAGTGGATCATGATGTTACATTACAGGAAGTTGAGGAGTATTTTGCTCACTACATAGTTAAAGACAGGCTAGGAATTGTTGCAAGTGCACACACTGTCTTTGCTGATAAGGATCCTGAAAGGGCAATGAGCCCTGCATGCATTGAGCTTGCAAAGCTACACTCAACAGCAGTTGATTTTGCAAAATCTGGCGTGCCAGCAGAATTTCCACCGCATCTCCACGTTGAAGAGTATCCGGATTTCATGGAAAAGCCAGACAGACAAAGCTACCAATCAAACAGCATAATAGGAAAGCTTTACCGCGAGGTGAAGAACATTGCACATCACAACAACAAGGCCTTCTTCACCAGAAGAGTGGCAAGGCAATCGTACGACCGCGACATGGAGGTCGATGGCTTTGAGAAGTACACGGCTGCGGCTCGCGAATACAAGAACATGTATGACTTCAAGCTAGGGAGCCTGATGGACTACTATGGCATAGAAACAGAAGCAGAAGTGATCAGTGGCAACATCTTGAAGATGTCGAAATCGTTCAATGAAAGGAAGGACTTGGAAGGAATCAACCATGCTGTGATGTCACTGAGAAAGGAAGCTAGAAGCTGGTTCAATGTGATGAACAAGTCAAATCCTCAAGGTGCATGTGCAATAGCATCAGCTTGGTACCATGTTACATATCATCCTAGGTATTGGGGATCCTACAATCAAGGGCTGAAAAGGGACCATTTCCTCAGTTTTGCATGGTGTGTGCATGACACTCTCATTCAGATAAAGAAGGACAAAGTCAGTCATGGAACTTTTGCTGTGGAGCTTTGGACAATCCTGAAATTGTTCCCCATTTTACTGGAGAGAGAGGAAGAGAAGGGTGAAGGGGAAAACGAGGATCCAAGTGCGGCGCGAAAGGTTCTTAAAGCAGACCGCGAGAAACTCAGAAGGGATCGACTCAACGAACACTTCCAAGAGCTGGGAAACACGTTAGATCCTGATAGACCAAAGAATGACAAGGCAACTATCCTCACTGAGACCATCCAAATACTAAAGGACTTGAACGCTGAAGTTAATAGGCTTAAAATGGAGCATAAAGAACTTTCTGAGGAGTCACGTGAACTAATGCAAGAAAAGAATGAACTTAGAGAAGAGAAGACATCTCTAAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTCAGAGTAATGTTCCCATGGACTGCAATTGACCATTCTGTTGTCATTAGTCCACCTTACTCATATCCACTTCCTATACCTATCCCTCCTGCTCCAATTTCCATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCCGGTCACATTCCTAATCCTTGTTCAATGTATGTCCCATATTCTACTCCAACTAACCCCCCAGTTGAGCCGCCATCAACGATGTATGCTTCCACATCCCATGCATCAAACCAAAAAGAATCCCGTAGCAAGTCACCAGGTCATAGAAGAAGGTCCAGTGATGCTGAAAGAAGTGGTGAGTCTCACGATGATTGTACTTCTGGAGGAAGGAAGGGAAAGCATTCAGTGACGAAGGATAGAACCGTCATAGGTGGGAGTGCTTCAAGCCATTATTCTTCATCTCAAGGACTTCTAGATAGCTCCAACAGCGTGGGTGACATCCCAAAGACTGATAATTGA 3717 0.4162 MSKTIQMHGFPSNMSAEEVKKFMEQHTGHQTVHAVEVRQHKEGDPTTTYVDVQFIDRKSVETILLLVTQHLSYSAYVLNASEMKHDILPKPRIFPHNMDDIVVHFGCLTSKDKLSVLWEHPNASVKFGSRLRNIYIFLHYLKMDYKLQISSESISCIELCHSDDLTKKILLFQLRGAPMIYEKDVSKSKYFKEACDNHWFRGVDFTPSCSIGQSSALCFELPQGVEVPKFNQHYRNYNEVDDRIFTLEKHLGFSSSNHNFFPIMIPPEGFNLPYKILFKINSLIQHGCLPVQAIDINLFHLLDPRRVRIEYIESALHKLDQMKECCYEPAQWLEKQYNKYSSNSLVPVSSAISLDDGLVYVHRVKVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDEDMYKLHSADLVPRSSSTEVDRETKLHERVLSTLKDGIAIGDKKFEFLAFSPSQLRDNSVWMFAPRTGLTASDIRKWMGEFHEIRNVAKYAARLGQSFSSSRETVSVGRHEIEIIPDVEFRRGETKYCFSDGIGKISSELAKEVAEKCGCRDNNIPSAFQIRYGGYKGVVAIDPTSSTKLSLRKSMCKYKSENTKLDVLAWSKYKPCYLNRQVITLLSTLGVKDGVFRKKQREKGRRPHPNECSGSDLDGDIYFVSWDPDLIPPRQENPMDHEPSQVMKVDHDVTLQEVEEYFAHYIVKDRLGIVASAHTVFADKDPERAMSPACIELAKLHSTAVDFAKSGVPAEFPPHLHVEEYPDFMEKPDRQSYQSNSIIGKLYREVKNIAHHNNKAFFTRRVARQSYDRDMEVDGFEKYTAAAREYKNMYDFKLGSLMDYYGIETEAEVISGNILKMSKSFNERKDLEGINHAVMSLRKEARSWFNVMNKSNPQGACAIASAWYHVTYHPRYWGSYNQGLKRDHFLSFAWCVHDTLIQIKKDKVSHGTFAVELWTILKLFPILLEREEEKGEGENEDPSAARKVLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETIQILKDLNAEVNRLKMEHKELSEESRELMQEKNELREEKTSLKSDIENLNAQYQQRVRVMFPWTAIDHSVVISPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPGHIPNPCSMYVPYSTPTNPPVEPPSTMYASTSHASNQKESRSKSPGHRRRSSDAERSGESHDDCTSGGRKGKHSVTKDRTVIGGSASSHYSSSQGLLDSSNSVGDIPKTDN 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1661 1238 PANTHER RNA-DEPENDENT RNA POLYMERASE 636 964 IPR007855 GO:0003968
Aed8g1661 1238 SMART finulus 984 1034 IPR011598 GO:0046983
Aed8g1661 1238 MobiDBLite consensus disorder prediction 1167 1204 - -
Aed8g1661 1238 MobiDBLite consensus disorder prediction 1151 1166 - -
Aed8g1661 1238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 976 1048 IPR036638 GO:0046983
Aed8g1661 1238 CDD bHLH_AtILR3_like 983 1057 - -
Aed8g1661 1238 Gene3D - 977 1061 IPR036638 GO:0046983
Aed8g1661 1238 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 635 - -
Aed8g1661 1238 MobiDBLite consensus disorder prediction 1145 1238 - -
Aed8g1661 1238 Coils Coil 1018 1073 - -
Aed8g1661 1238 Pfam RNA dependent RNA polymerase 366 635 IPR007855 GO:0003968
Aed8g1661 1238 Pfam RNA dependent RNA polymerase 636 783 IPR007855 GO:0003968
Aed8g1661 1238 PANTHER RNA-DEPENDENT RNA POLYMERASE 636 964 - -
Aed8g1661 1238 MobiDBLite consensus disorder prediction 1207 1238 - -
Aed8g1661 1238 Pfam Helix-loop-helix DNA-binding domain 979 1028 IPR011598 GO:0046983
Aed8g1661 1238 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 635 IPR007855 GO:0003968
Aed8g1661 1238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 978 1028 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1661 Aed-Chr8 21724459 21735418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1661 951 1192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 51.417 4.54e-65 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed8g1661 RdRP 1.7e-86 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1661 K11699 - gmx:100805477 1162.52