LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g1645	ATGAGATCTCGTAAGAGCACTTTCATAAAGAGAAGTAAGTGCCCAATCAGGAAAATCAATGAATTTTCAACCTTGTATGGAGTTGAAGCCTGTTTGATTGTGTATAGTGATGATGATGATGGCCGCAATAATATTAAACCAGTGACTTGGCCTGAAGACCCCAAAGTGTTACACTCCATCATTGAGAAATATGAGCATCAAAAGAATGAGAAACCTCCAAAGATCTTTGGTGTTCAAGACTTTGTTGAGAATACGAAGAGCATGCTTGAAGCTGAGATTTCCAAAGTCCACAAGCAAATCTCCAACATCAAGTATCCATCTTGGAATTCGTGTATGGCGAGCATGGAAGAGGAGCAACTGAGGGCCTTCATTGCTCAGGTGGATGCTAAGATTATGGCTTGTGCTCATATATTGAAAAACAGGCATCAAAGTGAAGGTGGTGATCTTGTGGGTCGGACCAATCAACCTGATGAATCTATCTTCAAAAGTATTTGTGTTCAATCTCAGAATGAACAACTAGGAGGAGGAGCTATCTTGCCACCACCATTGGATGGATTTCAAACAGATTGCTATAATATGAATTTCTGA	588	0.4014	MRSRKSTFIKRSKCPIRKINEFSTLYGVEACLIVYSDDDDGRNNIKPVTWPEDPKVLHSIIEKYEHQKNEKPPKIFGVQDFVENTKSMLEAEISKVHKQISNIKYPSWNSCMASMEEEQLRAFIAQVDAKIMACAHILKNRHQSEGGDLVGRTNQPDESIFKSICVQSQNEQLGGGAILPPPLDGFQTDCYNMNF	195

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g1645	195	PANTHER	MADS BOX PROTEIN	2	139	-	-
	Aed8g1645	195	SUPERFAMILY	SRF-like	2	70	IPR036879	GO:0003677\|GO:0046983
	Aed8g1645	195	PANTHER	PROTEIN, PUTATIVE-RELATED	2	139	-	-
	Aed8g1645	195	ProSiteProfiles	MADS-box domain profile.	1	37	IPR002100	GO:0003677\|GO:0046983
	Aed8g1645	195	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	2	39	IPR002100	GO:0003677\|GO:0046983
	Aed8g1645	195	Gene3D	-	1	91	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g1645	Aed-Chr8	21529403	21530436	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g1645	2	144	Type I MADS-box Gene Family	AT5G55690	31.250	5.27e-15	69.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Aed8g1645		SRF-TF	3e-09	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g1645	-		-	gmx:106797420	194.897