LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g1643	ATGATTGGAGGCAAAGATCTTGTTCCCAGTGGCGTTGACTCCGAGGCTGAGAACTCAAGGACCAAGCTTCAACATCATGGTTTTGCTCATGCCAACAACAAGGTTGGTGTTGATGAGTTTCAGTACTCAACAACAACAACACCACCTTCATCAAAGGTTGCTGTTTCCACTTCTGGGTTGCAAGAGTTGACCCTCAGCTACCTCTGCGAGAATCCAAAATTGAGTCTTGTCGAGAGAGAGGTGGGTGATAGAAGAAGCTTAGTGCTGAATAAGGGCAAAGAAGTTGTTGCTGTTTATGGGAATTCAGATCAGGATGAGAAATTGAGGTTTAGTGCACAACAGTACTTCGAACAGGATTGCCTCCGGAGAAAGATACATGTCGGAAACCAAAAGCAAGATCAAGATGAGAAATGGGTAGAGAGGGATTTCTTGAGTTTGAGTGAATCAAGGGAGAATTCTTCAAAGAGATCCATTGAGGAAGAAGAAGAGTGTGAGAGAGAGAAGAGTGGTGGTGGAAACAAGAAGCAGAAGCTTGAGAAGACTCTTAACCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCCTCAAACGCTTTGCAAAATGGTGACCAACTTGTTAGGCCAAAGCCTAGTAAGCCATCCACAGGGACCACAACCACATTCAATTCTTGTTCAAATGATTACACAGCAGCTTCTTTGTCTCACTCCTACTCTCACCCTTTCTCACACAACCTGAGTTGCTCACTCACCCGAAATTCGACCGAGAATTTCGAGTATTCACACAGCAAAGATGATCAAATTTGGCATTGTGGGGAGGGTACTAACGGCTCGGTTCATAGCAGGTTCAAGCCAATTGGAGATGGTGTTGCTTTGGCCAATCATTCCTTCATGCAAGGGAGTAGTCAGCATCATAAGGCTACCACTAGCTCAGATAACCAATCTTTTTACCCTTCAGAATTGCCCGCAAGAGTGAGATTGGAGGCTCAGTCAGAGGGCTCCAGAGGAAAGAAATCCGCAAATGTAAGAGGCTTGGAAGGTGTGAAAATAATGAACTTTTCTACATCGGATGATAGAGTTCTAAGAGAGATCGTGTCCGAGTCAATCCCAGCCATGGCATTGACATTCCAGGAGTTCACCGACGAAGCCATAGCTTCAATCAAGGAACACCTGAAAGGACTAATAGAGCTGCCAGAGAAGAAAGGCGAATTGGAGAGCCTCCAGAGCTGGCTCGCCCGAAGATCCGACCTCACAAGAGAGACTCTTTCAAAGTGTCACAAGCAGCAGCTGGAGATTCTGGCTGCTATCAAGACGGGGCTTGGCAGTTTCTTGACTGGCAAGTTCCAATTCGCGGAGACCCTCGATGTTTTCCTGAACACGAGATGTAGAAATGTGAATTGCAAGAGCTTGTTGCCTGTTGATGACTGTGACTGCAAGATGTGTTCAGGAAACAAAGGGTTCTGCAGTTCTTGCATGTGTCCAATTTGTATGAGCTTTGATTGTGCAAGCAACACTTGCAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCTGCATGTGCCATTCAGAGGAATCTCATCAAACCTGGGCCTAGCTTGAAGGGTCCTTCAGGGACCTCTGAGGTGCAGTTTCATTGCATTGGCTGTGGACACACTTCAGAAATGTATGGTTTTGTCAAAGATGTTTTTGTGTGCTGTGCCAAGGATTGGGGCCTGGAAACCTTGGTGAAGGAGCTTGACTGTGTGAGGAGGATTTTCGGCGAAAGCAAAGATCGAAAAGGGAAGGAATTGCATGTTAAGACAGAAGATATGCTGCTAAAGCTTCAAGCTAAACTGGTTTCTCCTTTGGATGCCTGCAACCACATCACACAGTTTTTCAGCTATGCTGATGGCACGTCAGACTTTCCTCCTTCTGCAAAATGCTCAAAGGATTTGTCAACATCTAAAACCAACCTTACAATGGACACAACAACAACGTCGTCATCATCTCTTCCAAAATACACTTATGACATGAGCTACAACACCACTAGACCAAATGATCTTCTTCAACAAAAAGACCTGAAATCATCCTCCTCGCTCCATAAAAATGAGTCTGATTTCCACATAGAGGCTCTACTAAGGGAAGGAAGAGGAGGGCTAGAAAGCTTGGAGAGCGTGGTGCGAATCAAAGAGGCCGAGGCCAGAATGTTCCAGAACAAGGCAGATGAAGCAAGGAGAGACGCAGAAGGGTTCCAGAAGATGATCAAGACAAAGGCTTCACAGTTGGAGGAAGAGTATGCAGAAAGGCTTGGCAAGCTTTCATTGCTTGAGGCAGAGGAAAGGAGGAAGAAGAAATTTGATGAGCTCAGTGTGTTGCAAAACTCTCATTATGACTACTTCAACATGAAGAGCAGAATGCAAGATGAGATCCATGGCTTGTTGAAGAGAATGGAAGCAACAAAGCAGCAATGA	2460	0.4561	MIGGKDLVPSGVDSEAENSRTKLQHHGFAHANNKVGVDEFQYSTTTTPPSSKVAVSTSGLQELTLSYLCENPKLSLVEREVGDRRSLVLNKGKEVVAVYGNSDQDEKLRFSAQQYFEQDCLRRKIHVGNQKQDQDEKWVERDFLSLSESRENSSKRSIEEEEECEREKSGGGNKKQKLEKTLNLSLALPDVSLSLTASNALQNGDQLVRPKPSKPSTGTTTTFNSCSNDYTAASLSHSYSHPFSHNLSCSLTRNSTENFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANHSFMQGSSQHHKATTSSDNQSFYPSELPARVRLEAQSEGSRGKKSANVRGLEGVKIMNFSTSDDRVLREIVSESIPAMALTFQEFTDEAIASIKEHLKGLIELPEKKGELESLQSWLARRSDLTRETLSKCHKQQLEILAAIKTGLGSFLTGKFQFAETLDVFLNTRCRNVNCKSLLPVDDCDCKMCSGNKGFCSSCMCPICMSFDCASNTCSWVGCDVCSHWCHAACAIQRNLIKPGPSLKGPSGTSEVQFHCIGCGHTSEMYGFVKDVFVCCAKDWGLETLVKELDCVRRIFGESKDRKGKELHVKTEDMLLKLQAKLVSPLDACNHITQFFSYADGTSDFPPSAKCSKDLSTSKTNLTMDTTTTSSSSLPKYTYDMSYNTTRPNDLLQQKDLKSSSSLHKNESDFHIEALLREGRGGLESLESVVRIKEAEARMFQNKADEARRDAEGFQKMIKTKASQLEEEYAERLGKLSLLEAEERRKKKFDELSVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKQQ	819

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g1643	819	Coils	Coil	716	743	-	-
	Aed8g1643	819	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	756	778	IPR004082	-
	Aed8g1643	819	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	717	737	IPR004082	-
	Aed8g1643	819	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	415	430	IPR004082	-
	Aed8g1643	819	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	500	520	IPR004082	-
	Aed8g1643	819	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	454	475	IPR004082	-
	Aed8g1643	819	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	573	592	IPR004082	-
	Aed8g1643	819	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	376	398	IPR004082	-
	Aed8g1643	819	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	1	819	IPR004082	-
	Aed8g1643	819	Coils	Coil	799	819	-	-
	Aed8g1643	819	Coils	Coil	755	775	-	-
	Aed8g1643	819	MobiDBLite	consensus disorder prediction	203	224	-	-
	Aed8g1643	819	CDD	PHD_OBE1_like	493	552	-	-
	Aed8g1643	819	Pfam	Coiled-coil region of Oberon	687	810	IPR032535	-
	Aed8g1643	819	MobiDBLite	consensus disorder prediction	1	21	-	-
	Aed8g1643	819	MobiDBLite	consensus disorder prediction	149	177	-	-
	Aed8g1643	819	PANTHER	PROTEIN OBERON 3	1	819	-	-
	Aed8g1643	819	Pfam	PHD - plant homeodomain finger protein	463	587	IPR032881	-
	Aed8g1643	819	MobiDBLite	consensus disorder prediction	149	175	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g1643	Aed-Chr8	21505977	21509933	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g1643	463	560	PHD Gene Family	AT5G57380	28.571	2.61e-07	52.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g1643	-		-	gmx:100816647	1233.01