Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1633 ATGGCAGTGAAGAAGTATCACTGCGATTACTGCGAGAAGCAGTTTCAGGATACACCAGCGGATCGGAAACGACACGTTCGGGGCATTCAACACCAGCAAGCCAAAGCTCGTTGGTACGATTCCTTCAAACAACAACAACAACAACCTATTCGACCCCTTTGCTTTCACTTCGTCAACACGGGATTTTGCCGTTTCGGCGAGTCTTGCAAATATCTCCATCCCAACAACAATGTACAGCCGCCCCCAATTCCGTCACCATCATTCGCCAATCTGCCCCCGTCGCTGCAGCCTCCGCCCGACCCTGGATATCTTCATCTTCCTTTTCTCGACTGGGGATAG 339 0.5133 MAVKKYHCDYCEKQFQDTPADRKRHVRGIQHQQAKARWYDSFKQQQQQPIRPLCFHFVNTGFCRFGESCKYLHPNNNVQPPPIPSPSFANLPPSLQPPPDPGYLHLPFLDWG 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1633 112 Gene3D Classic Zinc Finger 3 47 - -
Aed8g1633 112 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 74 IPR000571 GO:0046872
Aed8g1633 112 Gene3D - 48 93 - -
Aed8g1633 112 PANTHER NUCLEASE-RELATED 86 112 - -
Aed8g1633 112 PANTHER NUCLEASE-RELATED 1 78 - -
Aed8g1633 112 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Aed8g1633 112 SUPERFAMILY CCCH zinc finger 52 79 IPR036855 GO:0046872
Aed8g1633 112 SUPERFAMILY beta-beta-alpha zinc fingers 4 51 IPR036236 -
Aed8g1633 112 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Aed8g1633 112 SMART c3hfinal6 49 75 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1633 Aed-Chr8 21390335 21390741 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed8g1633 zf-U1 9.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1633 K13152 - gmx:100527203 195.282