Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1601 ATGTTTTTCTTGACAAAGATCTCTACTTGGATATCTGATGTACTTCTGAAAAGAGATGAAACCTGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGAGATGATTGCCCACTGATTTGGGGTGTATGCAATCACACATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAGTGGCAGTTTAAAGGATGA 252 0.4325 MFFLTKISTWISDVLLKRDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHTFHLHCILKWVNSQTSQAHCPMCRREWQFKG 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1601 83 CDD RING-H2_APC11 19 81 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Aed8g1601 83 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 83 IPR013083 -
Aed8g1601 83 ProSiteProfiles Zinc finger RING-type profile. 33 76 IPR001841 -
Aed8g1601 83 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 6 82 - -
Aed8g1601 83 SUPERFAMILY RING/U-box 8 82 - -
Aed8g1601 83 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 7 82 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Aed8g1601 83 PANTHER RING BOX 6 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1601 Aed-Chr8 21169060 21171285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1601 22 78 C3H Transcription Factor Family AT5G01980 33.333 6.48e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1601 K03358 - gmx:100775777 160.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1601 8 21169060 21171285 Aed8g1601 8 21169060 21171285 ECH