Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1599 ATGCCTTTGTATGAGTTATACCGGCTGGCCAGAGAGAAGCTTGGTAAAGACACTACCAGCACACGTGCACCTGATCAATGCTCCTCGCCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCGAGCCAGGGTCAGTCCAGTAAAGTTAGAAGGAGCCCCTCTTGCAAGAGTTTGCCATCTCACTGCTTACCTTCTCACAGTCCAAAGGGTAGAGATAAAGATTTAGGATATGGTAACAACACAAGGATGGCAAAATTCGGGGATTTCGACTCTGGATTTAATGAAATTCCGATGTCGGTGCCATCCCATGAAGTGGATTTCTGTCAAGATGAAGATGTGTTACCTTGGTTGGATTATACATCAATGGATGGTTCCTTGCAACATGAATATGCTTCTGATTTCCTCCCTGCCTCAAACAGTTTTACTCTATTAGATAAAAAAAGTAATGGCAATATGGTGTTTAGGGATTCTCATAAACCTTCTGAAGAACAAGGGAATGTTTTCAAGGGTTCTTCAGCTGAGCAGGTCGAGACTGCCAGACCTAAAGCTGGCACCGCCCAGTTATATCCCTCATCATTGCATCAGTGTCAAACATCTTTTGTATCTTCTAGATCCAGAGAATCAGATATAACTGAAAATAACAATACGAGTAATGCAAACCAGGACGCATCTTATGGCGAAATTACTCATATTCTTTCTTCTGCAAGAGATTTTTCTAGCTCAAAGGTGCAGAAAAATGATCCACCTATGACTAGTAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATGGTAAGAGCTAATCTCCAGAACATTGGCCTGAAGTCTGGTTTGCCTTCAGCAAGATCAGACAGTATGGAAATTATGAATAAAGGTGCTGCTGTAACTAACAGCAATCCTCCCGAATCAATTCTTGTTGATTCAAGTGGTGAACGTTCGAAGGAACCAACCATGCAATGCCGGCAGGTTGTGGAGCAATCCAAGGCTGATGTGAACTCTTTGCAGCCAAAATCTGTTGAACAGAATGCTGTGCCTTCTAAGCAGTCAGAGTCTGCTTGTAAAGAGAGTGCCACTAAGATTGATCAAACTCCCAATCGAGTTCTTGGTGACAGTGGCACTAAAGGACAGTCAGCTGCTGAAAAAAGTATGGAGCCAGCAGTGGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGTTCAGAAGTGCCAAATCAAGATTTGAAGCGAAAAAGAAAAGACACTGATGACTCCGATTTCCTCCCTCCATTAACCAAGAAAATATTTTACGTGAAGGACGTTGAGGAAGAATCAGCAGGTGTTAAAAAGGCTTCTGGTGGGCGAGGAAGTATGGGTAAGAGAACCCGTGCAGCTGAAGTGCATAATCAATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATCGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCGGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTGGCATGCATATGGGATATGGTATGGGTTATGCGATGGGAATTCCTGACATGAATGGTGGATCTTCAAGATTCCCTATGATTCAAATGCCCCAAATGCAAGGAACTCATATTCCTATTGCACATATGTCTGGACCTACTGCTCTGCATGGGATGGCCAGATCAAATACTCCGGGATTTGGGCTTCCTGGACAAGGACATCCCATGCCAATGCCGCGAGCTCCCATGTTTCCTTTTTCAGGAGGGCCTCTCATGAACTCACCAGCTATGGGATTACATGCCTGTGGATCATCGGGACTTGTTGAAACTGTGGCTTCTGCTTCTGCCTTGAAGGATCAAATGCCAAATGTTGATCCACCATGTGAAGCAGCAGCTGTAGGATTTGAGCAATCTGCTTTGGCTCATAGTAGCGGCCATGCATCCGAAGCTAATGACAATGGAGCTGTTAATCCTCGTCCTGGCAGATAA 2121 0.4422 MPLYELYRLAREKLGKDTTSTRAPDQCSSPENDFFELVWENGQISSQGQSSKVRRSPSCKSLPSHCLPSHSPKGRDKDLGYGNNTRMAKFGDFDSGFNEIPMSVPSHEVDFCQDEDVLPWLDYTSMDGSLQHEYASDFLPASNSFTLLDKKSNGNMVFRDSHKPSEEQGNVFKGSSAEQVETARPKAGTAQLYPSSLHQCQTSFVSSRSRESDITENNNTSNANQDASYGEITHILSSARDFSSSKVQKNDPPMTSNGSSSTIMNFSHFARPAAMVRANLQNIGLKSGLPSARSDSMEIMNKGAAVTNSNPPESILVDSSGERSKEPTMQCRQVVEQSKADVNSLQPKSVEQNAVPSKQSESACKESATKIDQTPNRVLGDSGTKGQSAAEKSMEPAVASSSVCSGNGADRGSEVPNQDLKRKRKDTDDSDFLPPLTKKIFYVKDVEEESAGVKKASGGRGSMGKRTRAAEVHNQSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFGMHMGYGMGYAMGIPDMNGGSSRFPMIQMPQMQGTHIPIAHMSGPTALHGMARSNTPGFGLPGQGHPMPMPRAPMFPFSGGPLMNSPAMGLHACGSSGLVETVASASALKDQMPNVDPPCEAAAVGFEQSALAHSSGHASEANDNGAVNPRPGR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1599 706 MobiDBLite consensus disorder prediction 241 262 - -
Aed8g1599 706 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Aed8g1599 706 MobiDBLite consensus disorder prediction 45 81 - -
Aed8g1599 706 MobiDBLite consensus disorder prediction 303 431 - -
Aed8g1599 706 MobiDBLite consensus disorder prediction 466 480 - -
Aed8g1599 706 PANTHER TRANSCRIPTION FACTOR PIF3 1 671 IPR044273 GO:0003700|GO:0006355
Aed8g1599 706 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 528 IPR036638 GO:0046983
Aed8g1599 706 PANTHER TRANSCRIPTION FACTOR PIF3 1 671 - -
Aed8g1599 706 MobiDBLite consensus disorder prediction 683 706 - -
Aed8g1599 706 MobiDBLite consensus disorder prediction 161 186 - -
Aed8g1599 706 Pfam Helix-loop-helix DNA-binding domain 472 518 IPR011598 GO:0046983
Aed8g1599 706 Gene3D - 464 526 IPR036638 GO:0046983
Aed8g1599 706 MobiDBLite consensus disorder prediction 45 65 - -
Aed8g1599 706 Coils Coil 474 494 - -
Aed8g1599 706 SMART finulus 474 523 IPR011598 GO:0046983
Aed8g1599 706 MobiDBLite consensus disorder prediction 415 431 - -
Aed8g1599 706 MobiDBLite consensus disorder prediction 206 228 - -
Aed8g1599 706 CDD bHLH_AtPIF_like 468 530 - -
Aed8g1599 706 MobiDBLite consensus disorder prediction 303 412 - -
Aed8g1599 706 MobiDBLite consensus disorder prediction 453 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1599 Aed-Chr8 21154871 21159466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1599 1 585 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.542 4.81e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed8g1599 HLH 7.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1599 K12126 - gmx:100794974 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1599 8 21154871 21159466 Aed8g1599 8 21154871 21159466 ECH