Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1597 ATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTAAGGAAAGGCCTTTGGTCTCCAGAGGAAGATGAGAAGCTTCTCAATTACATAACCAAACATGGTCATGGATGTTGGAGTTCGGTCCCCAAACTAGCTGGTTTGCAGAGATGTGGGAAGAGCTGTAGGTTAAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTTTCACAGCAAGAAGAGAACATGATTGTTGAACTCCATGCAGTCCTTGGAAACCGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACAGACAATGAGATTAAGAACCTATGGAACTCGTGCCTGAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAGCCACTCTCTGAGGTTGAGAACGACAAGGACATGATGATGCCACCACCACCACCCTCAACCAACAAAAGCAGCATTATTAATCAGAAAGCCTCTGTGGGATCCAATGAAGTAGTGAGTTTATTGGTTGATCATGATCATGATCATGATCATCAGCCACCACCAAAACCAATGCTTAATAATATTTCATCAGAGAGATACCACCCTCTTGAAGTTTCCACTAGCTCCACCCAGGAACTATTCCTAGACAGGTTTGGTAACAACAACACTTGCAGTCCCTCTGATGTTGTAGGATCATACTTCTCATTCCAGCACTTGAACTATGGAAATGGAACAACAACAACAACAACAACAAACATGCCCCTCTCTCAAAACACCAACAATTCTCTTTGTTTCATTCCACCTTCCACTTCTTCAGACCTTAACAACTCCACCATGCTCCATTCAGTTTTCCCTACACATTTGAAGCTCCAATCTGATGATGGGGTACTCCAAAACTGGGAAACCAGTAACTTGAGTAACAACACTAAGTGGGGGGTGGCAGAGTCAATGAAAGTTATTAACATTAACAAAGATGCTCAAGTGCCTCTACAACATGCAGAACAAGAGGATCTAAAATGGTCTGAGTATCTTAACACACCGTTCATTCTGGGAAACACAGCGCAAAATCATCATCATCATCAAATTCAAACCTCTCAATCTATCTACAGTAGTGAGGTTAAACCAGAAACAGGTTTCATAACAGAAGAATCATGTACTACTAGTTGGCACCACCAGCCACCAGCTTTTCAACTTTCCGATATATATAGCAAGGATCTCCAGAGATTTTCAGTGACTTTCGGACAAACCATGTAA 1233 0.4274 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDMMMPPPPPSTNKSSIINQKASVGSNEVVSLLVDHDHDHDHQPPPKPMLNNISSERYHPLEVSTSSTQELFLDRFGNNNTCSPSDVVGSYFSFQHLNYGNGTTTTTTTNMPLSQNTNNSLCFIPPSTSSDLNNSTMLHSVFPTHLKLQSDDGVLQNWETSNLSNNTKWGVAESMKVININKDAQVPLQHAEQEDLKWSEYLNTPFILGNTAQNHHHHQIQTSQSIYSSEVKPETGFITEESCTTSWHHQPPAFQLSDIYSKDLQRFSVTFGQTM 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1597 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aed8g1597 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed8g1597 410 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed8g1597 410 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed8g1597 410 Gene3D - 11 67 - -
Aed8g1597 410 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed8g1597 410 PANTHER HOMEODOMAIN-RELATED 1 278 - -
Aed8g1597 410 PANTHER HOMEODOMAIN-RELATED 287 403 - -
Aed8g1597 410 MobiDBLite consensus disorder prediction 120 134 - -
Aed8g1597 410 CDD SANT 17 61 IPR001005 -
Aed8g1597 410 Gene3D - 68 139 - -
Aed8g1597 410 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed8g1597 410 PANTHER MYB DOMAIN PROTEIN 55 1 278 - -
Aed8g1597 410 PANTHER MYB DOMAIN PROTEIN 55 287 403 - -
Aed8g1597 410 SMART sant 66 114 IPR001005 -
Aed8g1597 410 SMART sant 13 63 IPR001005 -
Aed8g1597 410 MobiDBLite consensus disorder prediction 120 149 - -
Aed8g1597 410 CDD SANT 69 109 IPR001005 -
Aed8g1597 410 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1597 Aed-Chr8 21130192 21132276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1597 1 410 MYB Transcription Factor Family AT1G09540 47.273 3.73e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed8g1597 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1597 K09422 - gmx:778072 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2342 2 26700014 26702028 Aed8g1597 8 21130192 21132276 ECH
Aed8g1597 8 21130192 21132276 Aed2g2342 2 26700014 26702028 ECH
Aed8g1597 8 21130192 21132276 Aed8g1597 8 21130192 21132276 ECH
Aed2g2363 2 26870251 26872201 Aed8g1597 8 21130192 21132276 ECH
Aed2g2363 2 26870251 26872201 Aed8g1597 8 21130192 21132276 PCT