Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1588 ATGAAGGTGTCGTCGGATTGGAGAAAGGAGAGAGGTGCATGCACTGGACAACCCTACGACGACGACGGCTGCTATGCCTATCAAGGAATCGGAAGGGGAGACACAGTGCCGAGGACACGCCAATTCTTCGCTTTTCTTTTTCTTTCTTCACATGCACAACGAAAGAAAAAGTGCGTGGCCTTATCCCCTCGCCGCTTCTTCTTCTTCTTTTACTTTCATTTCCTCACAATGGCTTCAATCATTGGTGTCTCCTCTTCCATCTCCATACACAAAACCCCCTCTCTTCATCTCCTCAAACGACCAACAACCGCCACAACAACCACCTCCGTTTCCTTCAACAACCGTAACCGTAACGCCACAGTACTCACTTCCGCCATTGCCGCCCCCACCCCATCCATACTCACGGGTTTAACTCTAGATGACGTCGTTAGTAATACTATCAACAACCACCAATTTGGCTTCGACTTCGAACCCGACAACACCCCTGCTAACGAACTCGACGTCTCTAAGCGGTCTGGGAAGCTTCCTAAGGCGTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTTGAGAAAGAGATACAAGAATCCGCGCCTTACCTTAACACGGTTTGTGTCTATGGTGGTGTTTCTTATGTAACACAGCAGAGTGCGCTTTCGCGCGGTGTTGATGTCGTGGTTGGAACTCCCGGGAGAATAATTGATCTTGTCAATGGAAACAGCCTTAAGCTGAGTGAGGTTCAGTATTTGGTCCTCGATGAAGCTGATCAGATGCTTGCTGTTGGGTTCGAGGAGGATGTGGAGGTCATTTTAGATAGGCTCCCGGCTCAGCGCCAGACCATGCTTTTCTCCGCAACCATGCCTGGTTGGGTCAAGAAACTGTCCAGAAAGCATTTGAACAATCCACTCACAATTGATTTGGTTGGTGACCAAGAAGAGAAGCTTGCTGAAGGGATCAAACTTTATGCTTTGTCTGCCACTGCCACTTCAAAACGGACAGTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGAGGGAAGACTATTGTTTTTACGCGGACAAAAAAGGATGCGGATGAAGTATCAATGGCATTAACAAGTAGTATAGCTTCCGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACCGATGTTGCAGCTCGTGGACTTGATATTCCAAATGTTGATTTGATTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGTACTGGGCGTGCAGGAAAAGAAGGTACTGCCATTCTGATGTATACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTCGAATTTGTTAGTCCTCCAGCTATGGAAGATATTTTGGAGTCATCTGCTGAGCAAGTTGTTGCTGCACTTAATAGAGTTGATCCTGAGTCTGTTGAATTTTTCACTGCAACTGCACAAAAATTGGTTGAAGAACAGGGAGCAAGGGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTCTCTCGACCTCCATCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACATTGCAACTGACTCGAGATCCAGATACTTCTGGAAGATTTTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCGGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGATAGGGTTCAAGGAGCTGTTTTTGATATTCCTGAGGAAATAGCTAAAGAGTTACTCAATAAGGATCTGCCATCTGGAAACACTCTTTCCAAAATCACCAAGTTACCTCTCTTGCAAGATGATGAACCTGCAAGTGATTCCTATGGGAAGTTTTCCGACAGAGGCCGAAGTAACCGAAGAGGTTCTAGGGATCAGAGAGGTTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAAGACAACGATGATGAGTTTGGACGAGGTGGTAGAAGTTTCAGATCCGGCAACAACAACAGGTCTCAAATGGGAAAAAGCAGCAGGGATGACTGGCTAATTGGAGGCAGTAGCAGATCAAGCAGGTTTTCATCACCCAACAGGTTATAG 2145 0.4583 MKVSSDWRKERGACTGQPYDDDGCYAYQGIGRGDTVPRTRQFFAFLFLSSHAQRKKKCVALSPRRFFFFFYFHFLTMASIIGVSSSISIHKTPSLHLLKRPTTATTTTSVSFNNRNRNATVLTSAIAAPTPSILTGLTLDDVVSNTINNHQFGFDFEPDNTPANELDVSKRSGKLPKALVLAPTRELAKQVEKEIQESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILDRLPAQRQTMLFSATMPGWVKKLSRKHLNNPLTIDLVGDQEEKLAEGIKLYALSATATSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSMALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAMEDILESSAEQVVAALNRVDPESVEFFTATAQKLVEEQGARALAAALAQMSGFSRPPSCRSLINHEQGWITLQLTRDPDTSGRFFSARSVTGFLSDVYSPAADEVGKIHLIADDRVQGAVFDIPEEIAKELLNKDLPSGNTLSKITKLPLLQDDEPASDSYGKFSDRGRSNRRGSRDQRGFRSSRGWEGGQDNDDEFGRGGRSFRSGNNNRSQMGKSSRDDWLIGGSSRSSRFSSPNRL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1588 714 Gene3D - 162 310 IPR027417 -
Aed8g1588 714 SMART ultradead3 33 323 IPR014001 -
Aed8g1588 714 Pfam DEAD/DEAH box helicase 172 295 IPR011545 GO:0003676|GO:0005524
Aed8g1588 714 Pfam Helicase conserved C-terminal domain 334 440 IPR001650 -
Aed8g1588 714 SMART helicmild6 360 440 IPR001650 -
Aed8g1588 714 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 306 IPR014001 -
Aed8g1588 714 MobiDBLite consensus disorder prediction 634 676 - -
Aed8g1588 714 Gene3D - 323 526 IPR027417 -
Aed8g1588 714 CDD GUCT_Hera 535 614 - -
Aed8g1588 714 MobiDBLite consensus disorder prediction 678 714 - -
Aed8g1588 714 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 480 IPR001650 -
Aed8g1588 714 CDD SF2_C_DEAD 332 449 - -
Aed8g1588 714 Pfam GUCT (NUC152) domain 527 627 IPR012562 GO:0003723|GO:0004386|GO:0005524
Aed8g1588 714 PANTHER - 164 706 - -
Aed8g1588 714 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 164 706 - -
Aed8g1588 714 MobiDBLite consensus disorder prediction 628 714 - -
Aed8g1588 714 CDD DEADc 166 307 - -
Aed8g1588 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 461 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1588 Aed-Chr8 21043337 21048278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1588 177 462 Eukaryotic Initiation Factors Gene Family AT1G72730 38.832 1.07e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1588 - - gmx:100815040 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2354 2 26793924 26799397 Aed8g1588 8 21043337 21048278 PCT