Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1578 ATGACATCTTCATTCTCAACTCAGTTGGTGCAAACTCAGAACCTACCTCCTCGTTTTCATCGTCATGTCCAGGGGAATTTAAGCCGAGATGTGTCAAAGGTTTCGATGGCACATGTGGTCTGTAGCAGTACCAAATCACAGCTTGGTTACGGTAAAACATTGGCATCAAGATCTCATTATGCTGCCAGATTTTCAGTCTCACGACAATCTGAAGCAAAATCAATCACATATAGGAGAATAACATGCACTAATGTTAAGGAAGATGTTCTAGAGCTGCAAGCCAAAGTGACAAACAAGTGTTTCTTTGATGTGGAAATTGGGGGTGAACCTGCTGGCAGAATTGTTTTCGGCCTATTTGGAGATGTTGCTCCAAAAACAGTTGAAAATTTCCGGGCTTTATGCACTGGCAAGCTATCATTTTTTTTCTACAGCAATTTGAATAATCTCTGTGCAGGAGAGAAAGGATATGGCTACAATGGGAGCTACTTCCATCGTATAATACCAAATTTCATGGTTCAGGGAGGGGACTTCACTGAAGGAAATGGAACTGGTGGAATCAGTATCTATGGTGAAAGATTTGAAGATGAAAATTTTGCATTGAAGCATGTGGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAATGGCAGTCAATTTTTTATCTGCACTGTACAGACTCCATGGTTAGACAGTCGCCATGTTGTGTTTGGACATGTCATTGAAGGAATAAAAGTTTTGAGGACACTTGAATCACAGGAGACAGGCAAGATGGATAAGCCTCGGAAGCCATGCAAAATTGCTAATTCTGGGGAGTTGCCTATAGATAGTTGA 840 0.4167 MTSSFSTQLVQTQNLPPRFHRHVQGNLSRDVSKVSMAHVVCSSTKSQLGYGKTLASRSHYAARFSVSRQSEAKSITYRRITCTNVKEDVLELQAKVTNKCFFDVEIGGEPAGRIVFGLFGDVAPKTVENFRALCTGKLSFFFYSNLNNLCAGEKGYGYNGSYFHRIIPNFMVQGGDFTEGNGTGGISIYGERFEDENFALKHVGPGVLSMANAGPNTNGSQFFICTVQTPWLDSRHVVFGHVIEGIKVLRTLESQETGKMDKPRKPCKIANSGELPIDS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1578 279 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 54 279 - -
Aed8g1578 279 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 54 279 - -
Aed8g1578 279 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 102 272 IPR002130 GO:0000413|GO:0003755
Aed8g1578 279 MobiDBLite consensus disorder prediction 255 279 - -
Aed8g1578 279 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 158 175 IPR020892 GO:0003755|GO:0006457
Aed8g1578 279 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 101 274 IPR002130 GO:0000413|GO:0003755
Aed8g1578 279 SUPERFAMILY Cyclophilin-like 91 275 IPR029000 -
Aed8g1578 279 Gene3D - 87 278 IPR029000 -
Aed8g1578 279 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 206 221 IPR002130 GO:0000413|GO:0003755
Aed8g1578 279 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 163 175 IPR002130 GO:0000413|GO:0003755
Aed8g1578 279 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 IPR002130 GO:0000413|GO:0003755
Aed8g1578 279 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 221 233 IPR002130 GO:0000413|GO:0003755
Aed8g1578 279 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 234 249 IPR002130 GO:0000413|GO:0003755
Aed8g1578 279 CDD cyclophilin_ABH_like 99 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1578 Aed-Chr8 20989386 20993803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1578 112 269 U-box Gene Family AT5G67530 44.025 4.91e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1578 K03768 - gmx:100526955 471.085