Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1572 ATGGCTGAGAAGATGTCTGATTCCACCAAACCAGGGATGACTAGAACCACCTCCTATCTAGATTCCATTTATGGCAAAGGTTTTCTTGAGCTGGTATGGGGAAATGATCAACTTCACGTGCAGCAAGGAGGTTCATCACCATCATCATCATCAAGTGTCTTCACACGTATGAATCCCTCGTGCGAAGGTGCCTTCAATGCAAAGTTAAGCTCACTATACTCCCTCATGGACAATTCTCATCAAAGCAATGACCAAAATTCTTGTAAATTTGCAAAGGCTGCTTCTATTTCTAGCAGCAAAGGTCCTGATCATTCCTTAGTGATAAACTCACCTAAAGGATCACAGAGAAGACAAAAAAACCCTTTAATTTCTGATGCTGCATCAAACATGGTTCCAGGAAGTGTGGAAACATTAACAACACCCCCTGATGAGCAATCTGAAGCTGTTAGTATTCGTGAGCAATATTTTAACCAAACCTCAAGCTCAGTGGGACTTAGAGAGAAGAGAAAAGCTGATACTAAAAAGTACTGTGATGAAGCCTTGTTGGAATCTTCTTCCCTTGGGGCCTCAAATAACAGAAATGTTGTTTGTAGCAGGGAACATGATGACATCGATTACTCAACGTATTTAACCGATAATGATGAAGAACCTGAAGAAGATGTAGTGAAGGAAAAGCCTGCTCGAGAAGGCACCGGAGTCAAGAGAAGTAGGAATGCAGAAGTTCATAATTTATGTGAAAGGAAGCGAAGGGATAAGATCAACAAGAGGATGCGTATGTTGAAGGAGCTTATACCCAATTGCAATAAGATGATGTCAATGGGTGGTGGATTTTGTATGCCTTTTATGATGTTACCTAATGCTGCTCATCATATGATGAACACACCCCTTTTACATCAGTTAATGGGACTTGGAATGGGGTTCAGGCCAGGCACAGCCATGCCTTGCAGCAATATCCCTCAGTTCCCTATTGCACCTTTGCAAGGTATCACTGATAACAACAGAGTTCACATGTTTGGTGGTTTCCCTAACCAAGTGCCAACCATGCCGATTTCTCATCATGCACCTTTCAATCCAATGCTTGGAAATGCTTCTACACAAACCCCTCTTGCAACTAACACAGCTATCAACTTGGCAGAAAACCATGCTTCTTCTCAGTTAACTAGCACTCTACTGGCCTCAGTTCCCAAGAACTTGTATTTTAGTGCACAAGCTGAATAA 1218 0.4204 MAEKMSDSTKPGMTRTTSYLDSIYGKGFLELVWGNDQLHVQQGGSSPSSSSSVFTRMNPSCEGAFNAKLSSLYSLMDNSHQSNDQNSCKFAKAASISSSKGPDHSLVINSPKGSQRRQKNPLISDAASNMVPGSVETLTTPPDEQSEAVSIREQYFNQTSSSVGLREKRKADTKKYCDEALLESSSLGASNNRNVVCSREHDDIDYSTYLTDNDEEPEEDVVKEKPAREGTGVKRSRNAEVHNLCERKRRDKINKRMRMLKELIPNCNKMMSMGGGFCMPFMMLPNAAHHMMNTPLLHQLMGLGMGFRPGTAMPCSNIPQFPIAPLQGITDNNRVHMFGGFPNQVPTMPISHHAPFNPMLGNASTQTPLATNTAINLAENHASSQLTSTLLASVPKNLYFSAQAE 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1572 405 MobiDBLite consensus disorder prediction 220 243 - -
Aed8g1572 405 Gene3D - 230 279 IPR036638 GO:0046983
Aed8g1572 405 MobiDBLite consensus disorder prediction 93 148 - -
Aed8g1572 405 Pfam Helix-loop-helix DNA-binding domain 241 265 IPR011598 GO:0046983
Aed8g1572 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 270 IPR036638 GO:0046983
Aed8g1572 405 MobiDBLite consensus disorder prediction 209 243 - -
Aed8g1572 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 300 IPR011598 GO:0046983
Aed8g1572 405 PANTHER TRANSCRIPTION FACTOR PIF3 270 405 IPR044273 GO:0003700|GO:0006355
Aed8g1572 405 PANTHER TRANSCRIPTION FACTOR PIF3 1 270 IPR044273 GO:0003700|GO:0006355
Aed8g1572 405 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 270 405 - -
Aed8g1572 405 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1572 Aed-Chr8 20935154 20937035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1572 132 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 35.160 5.95e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed8g1572 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1572 K12126 - gmx:100818543 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2337 2 26658191 26660778 Aed8g1572 8 20935154 20937035 PCT