Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1559 ATGGGTTTGGAGCATGAGAATGGCGTAGAAGAGAGAAAGCATGATGACGTAAGCACGTCAGAGAATCGTGCAGAAAGCAGCACGAATAGGGAAAAGGAAGAAAAGAGCAAACAAAAAAAGTCAAAACCGGAGACAGTTCCATTTCACAAGCTGTTCGCTTTTGCAGACTCCACTGACATTCTTTTGATGGCTGTTGGGACCATTGGCGCCATTGGTAATGGCATGGGTTTGCCTCTCATGACGTTGCTATTCGGTGAAATGATTAATAGCTTCGGTAATAACCAGCGAACCCCCAACGTCGTCGAAGAAGTTTCCAAGGTTTCTCTTAAATTTGTGTACTTGGCAATAGGATCTGGCTTGGCAGCGTTTCTCCAGGTGACTTGTTGGATGGTCACGGGGGAGAGACAGGCTGCAAGGATAAGAGGATTGTATTTGAAAACCATTCTGAGACAAGATGTTGCTTTCTTTGATAAGGAAACAAACACCGGAGAGGTTGTTGGGAGGATGTCTGGTGACACTGTTCTCATTCAAGATGCCATGGGTGAGAAGGTTGGGAAGTTTCTGCAGCTAATAGCAACATTCATTGGGGGATTCGTGATAGCATTTATCAAAGGGTGGCTTCTTACTGTTGTCATGTTGTCCACTCTTCCACTTCTTGCTTTGTCAGGTGCTGCCATGGCCGTCATCATAGGCAAGACCGCTTCTCGAGGTCAAACAGCTTATGCCAAAGCTGCACATGTTGTTGAACAGACCATTGGATCAATAAGAACAGTTGCATCCTTTACTGGGGAAAAGCAAGCAGTATCAAGTTATAGAAAGTTTCTTGTAGAGGCTTACAAAGCAGGAGTTCATGAGGGTTCCATAGCTGGAGCTGGCCTAGGCACAGTTATGCTTGTTATCTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATATAATGGGGGCACGGTGATTAATGTCATTATTGCTGTGCTAACTGCTTCAATGTCTCTTGGACAGGCATCCCCTAGCATGAGTGCTTTTGCTGCAGGTCAGGCTGCAGCTTACAAAATGTTTGAGACAATTGAAAGGAAGCCAGAGATAGATGCTTATGATCCAAATGGAAAAGTATTAGAAGATATTCAAGGCGAAATAGAGTTGAGGGATGTTTATTTCAGTTATCCAGCAAGACCTGAGGAACTGATATTTAATGGATTCTCTCTTCATATAACTAGTGGTTCAACTGCGGCTTTAGTTGGACAAAGTGGAAGTGGAAAGAGTACGGTTATCAGCTTGGTAGAAAGATTCTATGATCCACATGCAGGTGAAGTTCTTATTGATGGAATTAACCTGAAAGAGTTTCAGCTTAGGTGGATAAGAGGAAAAATTGGCCTTGTCAGCCAGGAGCCGGTGTTGTTTGCATCTAGCATTAAGGATAACATTGCATATGGAAAGGAGGGAGCAACAATTGAAGAGATAAGAACAGCATCTGAACTTGCAAATGCTGCTAAATTCGTTGATAAGCTTCCACAGGGATTGGACACAATGGTTGGTGAGCATGGAACTCAGCTATCTGGTGGGCAGAAGCAACGCATTGCCATCGCAAGAGCAATCCTGAAAAATCCGAGAATTCTACTTCTAGATGAAGCCACAAGTGCACTTGATGCAGAGTCTGAAAGGGTAGTTCAAGAGGCTCTAGACAGGATCATGGTCAACAGAACTACTGTGGTAGTGGCACATCGCTTGAGCACAGTCAGAAATGCTGATATGATTGCTGTAATTCATAGAGGGAAGATGGTTGAGAAAGGAACACACTCAGAATTACTCAAGGATCCTGAGGGAGCTTACTCTCAACTTATACGCCTACAAGATATAAACAAGGTGTCAGAAGAAAGTGCAACCAATCACAACAAGAGTGAACTTTCTGTAGAATCCTTTAGACAATCTAGTCAAAGGAGATCATTTCAAAGATCTATTAGTAGGGGTTCATCCTTAGGGAATAGTAGCCACCACTCCTTTTCAGTTTCCTTTGGTTTACCATCAGCAGTTAACGTTGCTGATCCTGAACTTGAAAACTCACAACCCAAAGAAGAAGCACCAGAGGTTCCACTCAGCCGCCTTATTTCCCTCAACAAGCCAGAGATTCCAGTTCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTGTTATATTTCCAATATTTGGCGTGCTGATTTCCAGCGTCATCAAGACTTTCTATGAACCATTTGATGAGATGAAAAAGGACTCAAAGTTTTGGGCACTGATGTTTATGACACTTGGTGTTGCATCATTTCTGGTAATTCCTGCACGAGGATACTTTTTTGCCGTGGCAGGATGTAAGTTAATCGAACGTATCAGGCTTTTGTGTTTTGAGAAGGTTGTCAACATGGATGTTGGTTGGTTTGATGAGCCTGAAAACTCAAGTGGTGCCATTGGTGCAAGGCTCTCAGCAGATGCTGCTTCGGTTCGTGCCCTTGTTGGTGATGCGCTCGGACTAATGATTCAAAATTTAGCAACTGCATTGGCAGGTTTGATTATTGCTTTCGTTGCATCTTGGGAGCTGGCATTGATTATTCTTGTCTTGATTCCCCTCATTGGAGCAAATGGATATATTCAAATGAAATTCATGAAGGGATTCAGCGCAGATGCAAAGATGATGTACGAGGAAGCAAGCCAAGTTGCTAACGATGCAGTTGGAAGCATAAGAACAGTTTCTTCTTTCTGTGCTGAAGACAAGGTTATGGAACTATACAAGAAGAAATGTGAGGGGCCAATGCAAACAGGGATACGGCAAGGGTTGATCAGTGGATCAGGATTTGGGGTTTCATTTTTCTTACTGTTTTGTGTTTATGCAACCAGTTTCTACGCAGGAGCTAGACTTGTGGACGCTGGGAAGACAACATTCTCAGATGTTTTCCGGGTTTTCTTTGCATTAACTATGGCAGCTATTGGAATTTCCCAATCAAGCTCCTTTGCTCCTGACTCAAGCAAAGCCAAGTCAGCTACTGCTTCCATATTTGGAATAATTGATAAGAAATCAAAGATAAATTCAAGTGATGAGTCTGGTAGCACACTGGATAGCGTTAAGGGAGAAATTGAGCTTCGTCATGTGAGCTTCAAGTATCCTTCTAGGCCAGATATACAGATTTTCCGAGACCTCAACTTGACCATCCATTCTGGCAAGACAGTGGCTCTTGTTGGTGAAAGTGGAAGTGGCAAATCCACGGTGATTGCCTTGTTGCAAAGATTTTATGATCCTGATTCAGGGCAAATCACACTCGATGGGATAGAAATTCGTGAGTTACAGCTCAAGTGGTTAAGACAGCAAATGGGTCTTGTGAGCCAAGAGCCAGTTTTGTTCAATGAAAGTATACGTGCCAACATTGCCTATGGAAAAGGAGGTGATGCTACTGAAGCAGAAATCATAGCTGCAGCAGAATTGGCCAATGCCCATAAATTCATTAGTGCCTTACAACAGGGTTATGATACTATAGTGGGAGAGAGGGGAACCCAATTATCTGGTGGACAGAAGCAACGTGTAGCAATAGCTCGTGCCATAATAAAAAGTCCAAAGATATTGCTACTAGATGAGGCCACAAGTGCATTAGATGCTGAGTCAGAAAGAGTTGTTCAAGATGCATTGGACAAAGTCATGGTGAACAGAACTACTGTGGTTGTGGCACATCGTCTTTCTACAATAAAAAATGCAGATGTGATAGCTGTTGTAAAAAATGGAGTTATAGTGGAAAAGGGAAAGCATGAAACACTCATTAACGTTAGTGGTGGATTTTATGCTTCCTTAATCCAACTTCACACTAGTGCTTCAACAGTATGA 3861 0.4284 MGLEHENGVEERKHDDVSTSENRAESSTNREKEEKSKQKKSKPETVPFHKLFAFADSTDILLMAVGTIGAIGNGMGLPLMTLLFGEMINSFGNNQRTPNVVEEVSKVSLKFVYLAIGSGLAAFLQVTCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFIKGWLLTVVMLSTLPLLALSGAAMAVIIGKTASRGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSSYRKFLVEAYKAGVHEGSIAGAGLGTVMLVIFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFETIERKPEIDAYDPNGKVLEDIQGEIELRDVYFSYPARPEELIFNGFSLHITSGSTAALVGQSGSGKSTVISLVERFYDPHAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKEGATIEEIRTASELANAAKFVDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQDINKVSEESATNHNKSELSVESFRQSSQRRSFQRSISRGSSLGNSSHHSFSVSFGLPSAVNVADPELENSQPKEEAPEVPLSRLISLNKPEIPVLLIGCVAAIANGVIFPIFGVLISSVIKTFYEPFDEMKKDSKFWALMFMTLGVASFLVIPARGYFFAVAGCKLIERIRLLCFEKVVNMDVGWFDEPENSSGAIGARLSADAASVRALVGDALGLMIQNLATALAGLIIAFVASWELALIILVLIPLIGANGYIQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVSSFCAEDKVMELYKKKCEGPMQTGIRQGLISGSGFGVSFFLLFCVYATSFYAGARLVDAGKTTFSDVFRVFFALTMAAIGISQSSSFAPDSSKAKSATASIFGIIDKKSKINSSDESGSTLDSVKGEIELRHVSFKYPSRPDIQIFRDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIRELQLKWLRQQMGLVSQEPVLFNESIRANIAYGKGGDATEAEIIAAAELANAHKFISALQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINVSGGFYASLIQLHTSASTV 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1559 1286 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524
Aed8g1559 1286 Gene3D ABC transporter type 1, transmembrane domain 109 1015 IPR036640 GO:0005524|GO:0016021
Aed8g1559 1286 MobiDBLite consensus disorder prediction 1 42 - -
Aed8g1559 1286 Pfam ABC transporter 1060 1209 IPR003439 GO:0005524
Aed8g1559 1286 CDD ABC_6TM_Pgp_ABCB1_D1_like 63 347 - -
Aed8g1559 1286 Pfam ABC transporter transmembrane region 719 991 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed8g1559 1286 Pfam ABC transporter transmembrane region 64 337 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed8g1559 1286 CDD ABC_MTABC3_MDL1_MDL2 1041 1279 - -
Aed8g1559 1286 Pfam ABC transporter 405 553 IPR003439 GO:0005524
Aed8g1559 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 624 IPR027417 -
Aed8g1559 1286 PANTHER - 25 1282 - -
Aed8g1559 1286 SUPERFAMILY ABC transporter transmembrane region 50 370 IPR036640 GO:0005524|GO:0016021
Aed8g1559 1286 SMART AAA_5 1068 1261 IPR003593 -
Aed8g1559 1286 SMART AAA_5 413 599 IPR003593 -
Aed8g1559 1286 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 25 1282 - -
Aed8g1559 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 386 622 IPR003439 GO:0005524
Aed8g1559 1286 CDD ABC_MTABC3_MDL1_MDL2 386 624 - -
Aed8g1559 1286 CDD ABC_6TM_Pgp_ABCB1_D2_like 709 1024 - -
Aed8g1559 1286 SUPERFAMILY ABC transporter transmembrane region 707 1020 IPR036640 GO:0005524|GO:0016021
Aed8g1559 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 64 351 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed8g1559 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1041 1278 IPR003439 GO:0005524
Aed8g1559 1286 ProSitePatterns ABC transporters family signature. 1181 1195 IPR017871 GO:0005524
Aed8g1559 1286 Gene3D - 1031 1285 IPR027417 -
Aed8g1559 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 720 1006 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed8g1559 1286 Gene3D - 384 641 IPR027417 -
Aed8g1559 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1032 1278 IPR027417 -
Aed8g1559 1286 MobiDBLite consensus disorder prediction 631 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1559 Aed-Chr8 20849476 20855657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1559 39 1280 Calmodulin-binding Proteins AT2G36910 45.028 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1559 K05658 - gmx:100777909 2224.51