Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1556 ATGGAAAAAAAGACGACATGGATCTCTGCCGTTTCTCTGATACTCGTAGTCGGCGTTGCTATGGCCGTGGTTGCTTTTGTCTCCAACAACAACAGCGGAGGGGACGACGCCGAAAGCGACGGAGGCAACCGTGTGACGACCCACACCAAAGCTGTACAAGCCGTGTGCCAAAACAGTGACGACAAGCAGTTCTGCTCCGACACATTCCAATCCATCAACTCCTCGGACCCAATGGTCTACATCAAAACCGTAGTGAAAAACACGATGGAGGGCGTTATCAAAGCCTACAACCTCAGCGACACTCTCACCATCGAGAACAGCAAGTTCAACTCCAGCCTCAAGATGGCCGTCGACGACTGCAAGGACCTCATGCAATTCGCCATCGACGAGTTGCAAGCCTCACAGATCCTAATCAAGGACAACAACATCAACAACATCAACGACCGCGTCGCCGACCTCAAAAACTGGATCGGCGCCGTCGTCGCGTACCAGCAATCGTGCCTCGACGGCTTCGACACCGACGCGGAGAAAGAGATCATGGCCAAGTTGAAAGCTGGGGGCTTGGACGACATGGGGAAGCTAACGGCGTTAACGCTTGACGTCATAACCGGCTTCGCCGAACTACTCTCTAGTTTCAACTTGGATTTAACCAACAAACCCACCACCTCTCGTCGCCTTCTTGATGTGGATCAAGATGGATTCCCGTCTTGGCTGTCCATCCATGACCGCAAGCTCTTGGCCGGTGGAGCTTCACTTCCTCCTAACGCCGTTGTTGCCAAGGATGGTAGCGGTCAATTCAAGACTATTTTGGAGGCTATCAACTCTTACCCCAAGGGCCATCAAGGCAGATTCGTCATCTACGTCAAGGCTGGTGTCTATGACGAGTACATCACCGTCGACAAGAAGAAGCCGAATTTGCTAATCTACGGTGATGGCCCAACAAAGACCATTGTCACAGGCAATAAAAACGTCAAGGATGGCTATAAGACAATGACATCCGCTACCTTCTCGACAAATGCAGAAGATTTCATTGCGAAGTCGATGGCATTTGAGAACACCGCAGGTCCAGCTAAACACCAAGCAGTGGCGCTTCGCGTGCAAGGTGATCGTTCGGCGTTCTTCGACTGTGCCATGCACGGTTACCAGGACACTCTGTACACCCACGCACACCGTCAGTTCTACCGCAACTGCGAGATCTCCGGCACAGTGGACTTCATATTCGGCTACGGCTCCGTCCTGATCCAAAGCTCGAAGATCGTCGTGAGGAAGCCCGACGCAAATCAACAGAACATAATAGTAGCGGACGGCACAGCACAAAAGAACATGCCGACGGGAGCAGTGCTTCAGAACTGCCAGATCGTGCCGGAGCCGGCGTTGGAGCCGGTGAAGATGACGGTGAGGTCGTACTTGGCGAGGCCATGGAAGGCATACTCAAGAGCCATCTTCATGGAGAACACTATCGGAGATTTCATTCAGCCAGATGGGTTTCTTCCGTGGAATGGGAACTTGTATCTGGACACGTGTTACTTTGCGGAGTACGGCAACACTGGAATGGGTGCAAATACTCAAACTAGGGTTAAGTGGGGTAAAGGAGTCCTTACCAAAGCTGACGCTACCCAATACACGGCTGACAAATGGCTCCAAGCCAACACGTGGTTGCCCGCTACTGGCGTGCCTTTCGATCTCAGCTTCACTAAATAA 1701 0.522 MEKKTTWISAVSLILVVGVAMAVVAFVSNNNSGGDDAESDGGNRVTTHTKAVQAVCQNSDDKQFCSDTFQSINSSDPMVYIKTVVKNTMEGVIKAYNLSDTLTIENSKFNSSLKMAVDDCKDLMQFAIDELQASQILIKDNNINNINDRVADLKNWIGAVVAYQQSCLDGFDTDAEKEIMAKLKAGGLDDMGKLTALTLDVITGFAELLSSFNLDLTNKPTTSRRLLDVDQDGFPSWLSIHDRKLLAGGASLPPNAVVAKDGSGQFKTILEAINSYPKGHQGRFVIYVKAGVYDEYITVDKKKPNLLIYGDGPTKTIVTGNKNVKDGYKTMTSATFSTNAEDFIAKSMAFENTAGPAKHQAVALRVQGDRSAFFDCAMHGYQDTLYTHAHRQFYRNCEISGTVDFIFGYGSVLIQSSKIVVRKPDANQQNIIVADGTAQKNMPTGAVLQNCQIVPEPALEPVKMTVRSYLARPWKAYSRAIFMENTIGDFIQPDGFLPWNGNLYLDTCYFAEYGNTGMGANTQTRVKWGKGVLTKADATQYTADKWLQANTWLPATGVPFDLSFTK 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1556 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 180 IPR035513 -
Aed8g1556 566 CDD PMEI-like_3 54 206 - -
Aed8g1556 566 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Aed8g1556 566 SUPERFAMILY Pectin lyase-like 253 561 IPR011050 -
Aed8g1556 566 PANTHER PECTINESTERASE 3 564 - -
Aed8g1556 566 SMART PMEI_2 47 201 IPR006501 GO:0004857
Aed8g1556 566 Pfam Plant invertase/pectin methylesterase inhibitor 51 185 IPR006501 GO:0004857
Aed8g1556 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 205 IPR035513 -
Aed8g1556 566 Pfam Pectinesterase 255 549 IPR000070 GO:0030599|GO:0042545
Aed8g1556 566 PANTHER PECTINESTERASE 3 564 - -
Aed8g1556 566 Gene3D - 250 564 IPR012334 -
Aed8g1556 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 45 178 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1556 Aed-Chr8 20821345 20823508 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1556 1 564 Carbohydrate Esterase AT5G49180 42.388 1.49e-141 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1556 K01051 - gmx:100820142 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2319 2 26537143 26538861 Aed8g1556 8 20821345 20823508 PCT
Aed8g1556 8 20821345 20823508 Aed2g2317 2 26526060 26527769 PCT