Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1554 ATGAGTGGAAAAATAATAATCTCCGGGGTTTCCCTGATCCTGGTGGTGGGTGTAGCGATCGGTGTTGTGGTTATTGTTAACAAAAGCTCATCCGATCCTCACGTAGCAGCTCAACAGAAATCAGTGAATGCAATGTGCGAAGGCACCGATGACAAAAGCCTCTGCCACGAAACCCTCAGCACCGTGGATGAAAAAAACGCCGCAGACCCGAAGGCGTACATAGCCGCGGGAGTGGAAGCAACGGTGAAGAGCGTGATCAAGGCGTTGAACATGAGCGACAAGCTCAGAGTGGAACACGGAGACAAAGACCCCGGCATCAAAATGGCCCTCGATGACTGCAAGGATTTGATCGAGTTGGCAATGGACAGCATCGAATCCTCTGCTAGTTTAGTTCGCGAAAAAAACCTTCAGGCGATGCACGACCAGACTCCTGATTTCAGGAACTGGCTTAGTGCTATCCTCTCCTACCAGGAATCATGCATGGACGGTTTAAACAACAAGACAAACGGCGAGGAGAAGATCAAGGAAGAGCTCCACACGGACAGCTTGGACCAGATGGGGAAGCTCACTGGAATAGTCCTTGACATTGTCTCTAACATGACCAAAATCCTCCAGAGCTTCGACCTCAAGCTGGATTTGAACCCGGCTTCTCGTCGCCTTCTCGAGGTTGACGCCGAAGGCCTCCCCACGTGGTTCTCCGCTTCGGATCGCCACCTTCTCGGTAAGGTCAACCAAGGACAAGGACCGCCGCCCAACGCCGTTGTTGCCAAGGATGGAAGTGGCCAGTTTAAAACCGTTATGGAAGCTATTAACTCCTACCCTAACGGCTTCAAAGGCAGATTCATTATTTATGTTAAAGCTGGCGTCTATGACGAGTATATCACTATTCCTAAGAGTTCTGCAAATATTCTCTTATACGGTGATGGACCTACCAAATCCATCATCACTGGTCACAAAAACTTCGCAGATGGAGTCAAGACAATGCAAACCGCCACCTTCGCGAATGTTGCACCTGGATTCATTGCAAAGGCAATTGCATTTGAGAACACAGCGGGTGCAGCAAAGCATCAGGCAGTGGCATTCAGGAACCAGGGAGACATGTCGGCGATGTTCGACTGCGCATTCCGAGGTTACCAAGACACATTGTACACCCAGTCAAACCGTCAATTCTACCGCAACTGCGAGATCTCAGGAACCATAGACTTCATCTTCGGATCCGGTGCGACTCTGATCCAGAACTCGAAAATCATAGTTCGGATGCCGATGCCTAACCAGTTCAACACTGTGACAGCGGACGGGACGAAGCAGAAGAACATGGCGACGGGGATCGTGCTGCAGAACTGCGAGATATTGCCGGAGCAAGCTCTGTTCCCTCAAAGGTTTCAAATAAAATCGTACCTGGGTCGGCCGTGGAAGGAATTCGCTAGAACGGTGGTTATGGAGTCGAACATTGGCGACTTTCTTCATCCAGAAGGGTGGACCCCATGGGACGGGAACTTGTTTCTGAACACGTTGTACTATGCTGAGTACGGTAATGTTGGACCCGGTTCCAACCTTCAAGGAAGGGTGAAGTGGCCGGGTTACCGTCCCAATATTCCGAAGAATGAGGCTGCGCAGTTCACTGCTGGACAATTCCTCAGAGGTGGACCTACTGGCAACGCTGATGATTGGTTGAAAGCTACCGGCGTTCCTTATACTGTTGGTTTCTTCAAAGGTTGA 1719 0.5038 MSGKIIISGVSLILVVGVAIGVVVIVNKSSSDPHVAAQQKSVNAMCEGTDDKSLCHETLSTVDEKNAADPKAYIAAGVEATVKSVIKALNMSDKLRVEHGDKDPGIKMALDDCKDLIELAMDSIESSASLVREKNLQAMHDQTPDFRNWLSAILSYQESCMDGLNNKTNGEEKIKEELHTDSLDQMGKLTGIVLDIVSNMTKILQSFDLKLDLNPASRRLLEVDAEGLPTWFSASDRHLLGKVNQGQGPPPNAVVAKDGSGQFKTVMEAINSYPNGFKGRFIIYVKAGVYDEYITIPKSSANILLYGDGPTKSIITGHKNFADGVKTMQTATFANVAPGFIAKAIAFENTAGAAKHQAVAFRNQGDMSAMFDCAFRGYQDTLYTQSNRQFYRNCEISGTIDFIFGSGATLIQNSKIIVRMPMPNQFNTVTADGTKQKNMATGIVLQNCEILPEQALFPQRFQIKSYLGRPWKEFARTVVMESNIGDFLHPEGWTPWDGNLFLNTLYYAEYGNVGPGSNLQGRVKWPGYRPNIPKNEAAQFTAGQFLRGGPTGNADDWLKATGVPYTVGFFKG 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1554 572 CDD PMEI-like_3 44 202 - -
Aed8g1554 572 Gene3D - 249 569 IPR012334 -
Aed8g1554 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 198 IPR006501 GO:0004857
Aed8g1554 572 Pfam Pectinesterase 252 548 IPR000070 GO:0030599|GO:0042545
Aed8g1554 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 201 IPR035513 -
Aed8g1554 572 SMART PMEI_2 37 196 IPR006501 GO:0004857
Aed8g1554 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Aed8g1554 572 PANTHER PECTINESTERASE 3 569 - -
Aed8g1554 572 SUPERFAMILY Pectin lyase-like 247 567 IPR011050 -
Aed8g1554 572 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Aed8g1554 572 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Aed8g1554 572 PANTHER PECTINESTERASE 3 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1554 Aed-Chr8 20814831 20817803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1554 5 572 Carbohydrate Esterase AT3G05610 41.361 2.94e-144 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1554 K01051 - gmx:100775246 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2317 2 26526060 26527769 Aed8g1554 8 20814831 20817803 PCT