Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1552 ATGGAAGCTAGATTTGGAGCTGAGGCTTATCATTTTTATGGTGTGGGTGCTTCCTCGGATTTGAGGGGTGTGGGGAAGAGGTCCTCAGAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATCGCTAGCCGGCACCTGAATCCGGTGCCGGCGGCAGATGGTGTGGGAGTGGGACAGCAATTTTTCCCTCTTGGATCCGCGATCCCGGTGGCCGGAGGTCCCTCCAACAGTTCTTCCACCTCTGAGGAAGTAGATCCTAGGGATCCCAAGGAAGGGGAAAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGGTGTGAATGAGGAAGTGGGTGGTACTCTTAGCTTGAAGCTTGGTGGGAATGCTTCTGCAGTGGTGGTGGATAGAGAAGTTGCGGCGAGCTGGGACGGTACTACGAATGGGAAGAAAAGTAGAGTGTCTGGAAGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCTGATCTGAGCAAAGCTAAGGATTATCACAGACGACATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAGGGCACTTGTGGGAAATGCAATGCAGAGATTCTGTCAACAATGTAGTCGGTTTCACATGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGCTTGGCAGGGCATAATAAACGTAGAAGGAAAACAAATCATGAAGCTGCTCCTAATGGAAGTTCATTAAATGATGATCAGACTAGTAGCTATCTGCTGATAAATACTTTCAAATATGCATTGTCAGATCAGACTACAGATCAGGATCTACTAACTCATATTCTGAGGAGTCTTGCTAGTCAGAATGGTGAACAAGGGGGGAAGAACATAGCTAACCTTTTGCGAGACCCAGAGAGTTTGTTGAGAGAAGATGGTTCATCAAGGAAGTTAGAGATGGTGTCAACTTTATTCTCCAATGGATCTCAAGGCTCTCCAACTGTTACAAGACAACATGAAACAGTGTCTATAGCTAAAATGCAGCAACAAGTGATGCATGCACATGATGCTAGAGCTGCTGATCAGCAAATTACATCATCTATAAAGCCCAGCATGTCAAACAGTCCTCCGGCCTACTCAGAAGCCAGAGACAGTACCGCCGGACAGATCAAGATGAATAATTTTGATTTAAATGACATATATATTGACTCAGATGATGGTATGGAAGATTTAGAAAGATTGCCTGTCTCTACAAATCTTGTGACTAGCTCTCTTGATTACCCATGGACACAACAAGATTCCCACCAGTCAAGTCCACCTCAAACAAGTGGAAATTCTGATTCTGCATCTGCCCAGTCTCCTTCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACCGATCGAATTGTTTTTAAGCTCTTTGGTAAAGAGCCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCTCACAGTCCTACTGATATGGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCATCAGACTGAGGCTTCGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTGTTGGATGTCTCAGATGATACTTTTTGGAGAAATGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTTTCAATGGTCAAGTTGTCATTGATACCTCCTTACCTTTCACAAGTAACAATTATAGCAAGATTTTGACTGTTAGTCCAATTGCTGTACCAGCATCAACGAGAGCTCAATTTTCTGTTAAGGGTGTCAACCTGATACACCCTGCCACTAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGGACTGTGAAGATGCTCATATGTCAATGGATCAATGCTCCAAAGAGCCTGATGAACTTCAGTGTGTCCAGTTTTCATGTTCTCTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATTGTTGTGGAGGAGGATGTTTGCTCAGAAATCTGTACACTTGAGCCTCTTCTAGAATTAAGTGAAACTGATCCAGATATAGAAGGGACTGGAAAAATTAAAGCCAAAAATCAAGCCATGGATTTTATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAGTTGAAATTAAGGATGGTTCAATTGAACTCTAGTGTGGATCTCTTTCCATTGAAACGGTTCAAGTGGCTTATTGAGTTTTCCATGGATCATGATTGGTGTGCAGCAGTAAGAAAAATGTTGAACCTACTGCTTGATGGAACTGTAAATACAGGAGATCATCCTTCCCTGTATCTTGCGCTTTCAGAGATGGGTCTCCTTCACAAAGCTGTGAGGAGAAATAGTAAGCAGTTAGTGGAGCTACTTTTGAGTTATGTTCCTGAGAATATTTCTGATGAACTAGGACCTGAAGACAAGGCACTAGTTGATGGAAAGAATCAGACCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCTGAGGATGTGCTTGATGCTTTGACTAATGATCCTTGCATGGTGGGAATTGAAGCATGGAAAAATGCTCGCGACAGCACAGGCTCCACTCCCGAGGATTATGCACGTTTACGTGGCCATTATGCTTACATTCACCTAGTGCAGAAGAAAATTAACAAGAGACAAGGATCAGCTCATGTGGTGGTTGAGATTCCAAGCAACACGACAGAGAGCAATACAAACCAGAAGCAAAACGAGTCATCATCCACTAGCTTTGAGATTGCGAAGGCTGCGGTAAGGCTTAACCAAGGACACTGTAAACTTTGTGACAGCAAAATTTCTTGCCGAACTGCTGTAGGCAGATCCTTGGCATACAGGCCTGCAATGCTCTCAATGGTGGCCATAGCCGCTGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGCTCACCCGAAGTCATATGTATGTTCCGACCCTTCAGGTGGGAAAATTTGGACTTTGGAACAAGCTAA 3036 0.441 MEARFGAEAYHFYGVGASSDLRGVGKRSSEWDLNDWRWDGDLFIASRHLNPVPAADGVGVGQQFFPLGSAIPVAGGPSNSSSTSEEVDPRDPKEGEKKRRVIVLEDDGVNEEVGGTLSLKLGGNASAVVVDREVAASWDGTTNGKKSRVSGSTSNRAVCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNHEAAPNGSSLNDDQTSSYLLINTFKYALSDQTTDQDLLTHILRSLASQNGEQGGKNIANLLRDPESLLREDGSSRKLEMVSTLFSNGSQGSPTVTRQHETVSIAKMQQQVMHAHDARAADQQITSSIKPSMSNSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSTNLVTSSLDYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLHQTEASWEELCYDLTSSLNRLLDVSDDTFWRNGWVHIRVQHQMAFIFNGQVVIDTSLPFTSNNYSKILTVSPIAVPASTRAQFSVKGVNLIHPATRLMCALEGKYLDCEDAHMSMDQCSKEPDELQCVQFSCSLPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICTLEPLLELSETDPDIEGTGKIKAKNQAMDFIHEMGWLLHRSQLKLRMVQLNSSVDLFPLKRFKWLIEFSMDHDWCAAVRKMLNLLLDGTVNTGDHPSLYLALSEMGLLHKAVRRNSKQLVELLLSYVPENISDELGPEDKALVDGKNQTFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYAYIHLVQKKINKRQGSAHVVVEIPSNTTESNTNQKQNESSSTSFEIAKAAVRLNQGHCKLCDSKISCRTAVGRSLAYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWENLDFGTS 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1552 1011 Gene3D - 149 220 IPR036893 GO:0003677|GO:0005634
Aed8g1552 1011 SUPERFAMILY SBT domain 157 237 IPR036893 GO:0003677|GO:0005634
Aed8g1552 1011 Gene3D - 750 952 IPR036770 -
Aed8g1552 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1010 IPR044817 GO:0003677
Aed8g1552 1011 Pfam SBP domain 159 232 IPR004333 GO:0003677
Aed8g1552 1011 SUPERFAMILY Ankyrin repeat 779 896 IPR036770 -
Aed8g1552 1011 MobiDBLite consensus disorder prediction 422 456 - -
Aed8g1552 1011 MobiDBLite consensus disorder prediction 224 246 - -
Aed8g1552 1011 MobiDBLite consensus disorder prediction 351 380 - -
Aed8g1552 1011 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Aed8g1552 1011 MobiDBLite consensus disorder prediction 71 100 - -
Aed8g1552 1011 MobiDBLite consensus disorder prediction 353 380 - -
Aed8g1552 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1010 - -
Aed8g1552 1011 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1552 Aed-Chr8 20796411 20804846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1552 1 1011 SBP-box Gene Family AT3G60030 52.998 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed8g1552 SBP 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1552 - - gmx:100809806 1844.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1552 8 20796411 20804846 Aed8g1552 8 20796411 20804846 ECH