Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1542 ATGGAGGTTCCAGAAATGGAAGGCAAGACCGAAAGTCATATGACATCAGCAGCAGCCTTTGTGGAAGGGGGGATTCAAGAAGCTTGTGACGATTCTTGCAGCATATGCCTTGAGGATTTTTGCAAAAGTGATCCTGCCGCTGTCACTAATTGCAAGCATGACTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCTCAATGCCCTATGTGTTGGCAGCCTATCAGCTTGAAGGATGCTACCAGTCAAGAGCTGCTTGAGGCAGTAGAGCTGGAGAGGAGCTTGAGGGAGACACCATCAAGAAATGCTGCGATTTTTCATCATCCGACACTTGGTGATTTTGAATTGCAGCATTTACCCATGGGTGTGAATGAGGCTGATATTGAAGAGCGAATAATTCAACATTTAACTGCTGCAGCAGCAATGAGGAGATCACACCACCTTGGCCGGAGGGAAGGCCAACGAACTAGGTCATCTGCTCATGGCCGTCCACACTTTTTAGTATACTCAACTCAGCCTAGTGCACCTCCATCAGCTGCTGGAGAGGGAAGTGAACCAGCCGCAATTCCTGTAGGAAGTCCATCTACCCCGCTTACATTTGATGGAGCTGAGCAATCATCACCACATCATATTCCCCAATTTCAAACCCAGAGTTCTTCTTTTACTCCTGGCTCTACTGTCACGGCATCAAATCTTCAAGAAATTCACTCTAATGATAGAAGGTTTGCTTCTCATTCTTTACCTGCAAGCCGAGATAGAGCACAGTCATCAGAACAATCGCTCTCCGATTCTCTGCGTTCCAGATTTAATGCAGTGTCCATGAGATATAAAGAATCAATTTCGAAGGGCACGAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCTGTGTCAGAACTTGGTTCAGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGCGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAAAATAATAGGGCTGCAGGCACTTCTTTAGCAAATCATTTGCGGAATCATTCCATCGCAGAGACAAGCAACCAAAACAATGTGGAAGCTCAGGGAGAGAACTCTTTCCACGACAATAATACTCCAACTACTTTTTCTGCTAACTCAGATTCAAAATGA 1143 0.4567 MEVPEMEGKTESHMTSAAAFVEGGIQEACDDSCSICLEDFCKSDPAAVTNCKHDFHLQCILEWCQRSSQCPMCWQPISLKDATSQELLEAVELERSLRETPSRNAAIFHHPTLGDFELQHLPMGVNEADIEERIIQHLTAAAAMRRSHHLGRREGQRTRSSAHGRPHFLVYSTQPSAPPSAAGEGSEPAAIPVGSPSTPLTFDGAEQSSPHHIPQFQTQSSSFTPGSTVTASNLQEIHSNDRRFASHSLPASRDRAQSSEQSLSDSLRSRFNAVSMRYKESISKGTRGWKERLFSPNSSVSELGSEVRRELNAKIASVSRLMERLETRENNRAAGTSLANHLRNHSIAETSNQNNVEAQGENSFHDNNTPTTFSANSDSK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1542 380 SMART ring_2 33 73 IPR001841 -
Aed8g1542 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 91 IPR013083 -
Aed8g1542 380 MobiDBLite consensus disorder prediction 251 266 - -
Aed8g1542 380 MobiDBLite consensus disorder prediction 340 380 - -
Aed8g1542 380 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 7 379 - -
Aed8g1542 380 MobiDBLite consensus disorder prediction 247 266 - -
Aed8g1542 380 MobiDBLite consensus disorder prediction 145 229 - -
Aed8g1542 380 Pfam Ring finger domain 31 73 IPR001841 -
Aed8g1542 380 MobiDBLite consensus disorder prediction 200 229 - -
Aed8g1542 380 SUPERFAMILY RING/U-box 25 80 - -
Aed8g1542 380 Coils Coil 308 328 - -
Aed8g1542 380 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Aed8g1542 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 7 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1542 Aed-Chr8 20720762 20725604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1542 30 81 C3H Transcription Factor Family AT4G00335 44.231 2.15e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1542 K19043 - gmx:100803582 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1542 8 20720762 20725604 Aed8g1542 8 20720762 20725604 ECH