Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1532 ATGGGCAACAACTGCGTGGGACCGAACGCCGGCAACGGCTTCCTCCAATCCGTCACGGCGGCGGTGTGGAAGACGCGCCCGCCGGAGGCCCGGCTCCCGCCGCCCACCGGCTCCCCGACTTCCAACAACACCCCCGCCCCCGCCGATAACTCCTCCAAAGCAGCCGCCTCCTCGGAGACAACAACAACAACCGATCCCGCCCTCCCGGTCCAGAGCACGCCCCCTGTCCAGGTAAAAATCCCGGTGTCTGCGGACGCGTCCGCGGCCACGAAGCCGCTCCCGCTGGAGCCGGAGAAGCCGGCCTCGAGCCACAACGGGGGCAGGAGCGGTGGCAACAACAAGGGCAAGAAGCCAACTCACGTGAAACGCGTGTCCAGTGTGGGACTCCAAGTGGATTCCGTATTAGGGCGCAAAACAGAAAACATGAAAGAGTTCTTCAGCTTGGGGCGCAAGCTAGGTCAGGGGCAATTCGGTACAACTTTCCTCTGCGTCCAGAAGGGCACAAACAAAGACTTCGCCTGCAAGTCGATCGCAAAGCGGAAGCTGACGTCGCAGGAGGACGTGGAGGACGTGAGGAGGGAGATTCAGATCATGCACCACTTGGCCGGACATCCCAACGTGATTCAGATTGCGGGGGCTTATGAGGACGCTGTGGCGGTGCACGTTGTGATGGAGCTTTGTGCTGGAGGGGAACTGTTTGATAGAATTATTCAGAGGGGGCATTACACTGAGAGAAAGGCTGCTGAGCTTGCTAGGCTCATTGTTAGTGTTGTGGAGGCTTGCCATTCGCTTGGGGTCATGCATAGGGATTTGAAGCCCGAGAATTTTTTGTTTGTTAATGGAGAGCTTGACTTTATTTCCGAACCCTGGCCTAGCATAACTGAAAGCGCAAAGGATCTTGTTCGAAGGATGCTTATAAGGGACCCCAAGAAGCGGTTGACAGCACATGAAGCCACCCATGGGTTCAGGTTGGAGGTGTGGCTCCTGATAAACCGCTTGATTCTGCTGTCTTGTCTCGTAATTGCTGAAAATCTGTCTGAGGAAGAAATTGCAGGACTGAGAGAAATGTTCAGGATGATAGACACGGATAACAGTGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTGGTGAGAGTTGGTTCTGTTCTTAAGGATTCTGAAATTACTTGGTTAATGCAAGCGGCAGACGTAGATAACAGTGGTACCATAGACTATGGTGAGTTCATAGCAGCTATGCTTCACCTAAACAAGATCCAGAAGGAGGATCATCTATATGCAGCATTCACATACTTTGACAAAGATGGTAGTGGATACATCACAAAAGATGAGCTCCAACAAGCGTTAGAACAGTTTGGCCTAAAGGAGTATCATCTAGACGAAATAATACGCGAAATCGACCGAGACAATGATGGACGCATTGATTACAGTGAGTTTGCTGCAATGATGCAAGACACTGGTTTTGGCAAAAAGGGGTTTTGA 1482 0.5229 MGNNCVGPNAGNGFLQSVTAAVWKTRPPEARLPPPTGSPTSNNTPAPADNSSKAAASSETTTTTDPALPVQSTPPVQVKIPVSADASAATKPLPLEPEKPASSHNGGRSGGNNKGKKPTHVKRVSSVGLQVDSVLGRKTENMKEFFSLGRKLGQGQFGTTFLCVQKGTNKDFACKSIAKRKLTSQEDVEDVRREIQIMHHLAGHPNVIQIAGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFVNGELDFISEPWPSITESAKDLVRRMLIRDPKKRLTAHEATHGFRLEVWLLINRLILLSCLVIAENLSEEEIAGLREMFRMIDTDNSGQITLEELKNGLVRVGSVLKDSEITWLMQAADVDNSGTIDYGEFIAAMLHLNKIQKEDHLYAAFTYFDKDGSGYITKDELQQALEQFGLKEYHLDEIIREIDRDNDGRIDYSEFAAMMQDTGFGKKGF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1532 493 SMART serkin_6 146 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g1532 493 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Aed8g1532 493 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Aed8g1532 493 Gene3D Transferase(Phosphotransferase) domain 1 185 282 - -
Aed8g1532 493 MobiDBLite consensus disorder prediction 18 76 - -
Aed8g1532 493 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 87 281 - -
Aed8g1532 493 Gene3D Phosphorylase Kinase; domain 1 150 226 - -
Aed8g1532 493 MobiDBLite consensus disorder prediction 42 71 - -
Aed8g1532 493 ProSiteProfiles EF-hand calcium-binding domain profile. 458 489 IPR002048 GO:0005509
Aed8g1532 493 MobiDBLite consensus disorder prediction 90 122 - -
Aed8g1532 493 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 336 486 - -
Aed8g1532 493 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 280 317 - -
Aed8g1532 493 ProSiteProfiles Protein kinase domain profile. 146 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g1532 493 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Aed8g1532 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 336 486 - -
Aed8g1532 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 280 317 - -
Aed8g1532 493 ProSitePatterns Protein kinases ATP-binding region signature. 152 179 IPR017441 GO:0005524
Aed8g1532 493 Pfam Protein kinase domain 147 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g1532 493 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Aed8g1532 493 Gene3D Transferase(Phosphotransferase) domain 1 283 319 - -
Aed8g1532 493 SMART efh_1 388 416 IPR002048 GO:0005509
Aed8g1532 493 SMART efh_1 352 380 IPR002048 GO:0005509
Aed8g1532 493 SMART efh_1 424 452 IPR002048 GO:0005509
Aed8g1532 493 SMART efh_1 458 486 IPR002048 GO:0005509
Aed8g1532 493 SUPERFAMILY EF-hand 344 484 IPR011992 -
Aed8g1532 493 SUPERFAMILY Protein kinase-like (PK-like) 146 320 IPR011009 -
Aed8g1532 493 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Aed8g1532 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 87 281 - -
Aed8g1532 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Aed8g1532 493 Pfam EF-hand domain pair 353 413 IPR002048 GO:0005509
Aed8g1532 493 Pfam EF-hand domain pair 423 484 IPR002048 GO:0005509
Aed8g1532 493 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Aed8g1532 493 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Aed8g1532 493 Gene3D - 329 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1532 Aed-Chr8 20598858 20602920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1532 279 493 EF-hand Containing Proteins AT2G38910 68.376 1.83e-106 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aed8g1532 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1532 K13412 - gmx:100813232 424.861