Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1531 ATGGCCGAGCCTGGCAATAGTAGTGATGGTGGTGATGGTGACATCAACACTTCTGGAAGCAAGCGCAGAGGCGGTACTGCTTCCAGCCGCACCATGACGACACAAATGGCACAAATTACACAAGATGACGAAGCGATCATGGTGGCTGGATCTTCACCTATGACACCGTGTGGGGCCTGCAAATTCTTGAGGAGGAGGTGCATTGAGGGGTGCATCTTTTCACCCCACTTTGGTACTGACCAGGGTGCAGCCAAGTTTGCAGCTGTTCACAAAGTGTTTGGGGCTAGCAATGTGTCGAAGCTCTTGTCGAACATTGCAATGAACCGCCGCGATGAGGCGGCGGCTACCATAACGTATGAGGCTCAGGCAAGGTTGTCCGATCCAATCTATGGTTGCGTCTCCACCATCCTTACCCTGCAACAACAGGTGGCATCTTTGCAAGCAGAGCTGACTATGTTGCAAACTCAGATGATGAACAGTAGGTTTTCCTATGCAAGTGCACTTCAAACCACACAGCTACAACAACAAAACATGAACGCATCAGCACTACAACCAACATACTCCAACAATTCATGTGCTTCCACTAACTTTCTGAACTTGGGAAGCTTCAACAACAACCCTAGCTTTGATCACCTTCCATTGATGGACACAGCAGCACCCTCATCGAGTTTGGAGCCTCTTCATCAACTCACAAGGTTGTCCCAATATGAGGAAGAGGATCAAGAAGAAAGCAACAAGACTCATCAAGCCTTCAACTATCGCTAA 765 0.4876 MAEPGNSSDGGDGDINTSGSKRRGGTASSRTMTTQMAQITQDDEAIMVAGSSPMTPCGACKFLRRRCIEGCIFSPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIAMNRRDEAAATITYEAQARLSDPIYGCVSTILTLQQQVASLQAELTMLQTQMMNSRFSYASALQTTQLQQQNMNASALQPTYSNNSCASTNFLNLGSFNNNPSFDHLPLMDTAAPSSSLEPLHQLTRLSQYEEEDQEESNKTHQAFNYR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1531 254 PANTHER LOB DOMAIN CONTAINING PROTEIN 20 247 - -
Aed8g1531 254 Coils Coil 136 156 - -
Aed8g1531 254 Pfam Lateral organ boundaries (LOB) domain 56 154 IPR004883 -
Aed8g1531 254 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 20 247 - -
Aed8g1531 254 MobiDBLite consensus disorder prediction 10 34 - -
Aed8g1531 254 ProSiteProfiles LOB domain profile. 55 157 IPR004883 -
Aed8g1531 254 MobiDBLite consensus disorder prediction 235 254 - -
Aed8g1531 254 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1531 Aed-Chr8 20593834 20595613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1531 55 244 AS2 family AT3G03760 58.081 4.12e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed8g1531 LOB 8.7e-37 No_clan