Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1503 ATGAAGACCATCCTCTCATCGGAGACGATGAACATTCCCGACGGCGTGGGCATCAAGGTTCACGCGAAGGTGATTGAGGTCGAGGGCCCACGCGGAAAGCTGGTCCGCGACTTCAAGCATCTGAACCTCGATTTCCAGCTCATCAAGGACGAGGAGGGCAAGAGGAAGCTGAAGATCGACGCCTGGTTCGGGTCCCGGAAAACCTCCGCTGCCATCCGCACCGCCCTCAGCCACGTCGAGAATCTCATCACTGGCGTCACCAAGGGCTACCGCTACAGGATGAGGTTCGTGTATGCTCACTTTCCCATCAACGCCAGCATTGGAAGCACCAACAAGAAAGTGGATATGCTTGAGGGTGTTTCCGTGGTTCGATCGGAGAAGGTGAAGGATGAGTTGGTTTTGGATGGGAATGACATAGAACTTGTTTCTAGGTCTTGTGCTCTCATTAACCAGAAATGCCATGTTAAAAAGAAGGATATCCGGAAGTTTCTTGATGGTATCTATGTCAGTGAGAGGGGGACAATATTGGAAGAGTAG 537 0.5177 MKTILSSETMNIPDGVGIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDEEGKRKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYRMRFVYAHFPINASIGSTNKKVDMLEGVSVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSERGTILEE 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1503 178 ProSitePatterns Ribosomal protein L6 signature 2. 151 172 IPR002359 GO:0003735|GO:0005840|GO:0006412
Aed8g1503 178 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aed8g1503 178 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aed8g1503 178 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 178 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aed8g1503 178 Gene3D - 90 178 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aed8g1503 178 PANTHER 60S RIBOSOMAL PROTEIN L9-1 1 178 - -
Aed8g1503 178 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aed8g1503 178 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 175 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aed8g1503 178 SUPERFAMILY Ribosomal protein L6 90 172 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1503 Aed-Chr8 20239131 20240746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1503 1 178 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 79.275 9.88e-109 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1503 K02940 - gmx:100306058 326.635