Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1480 ATGGAACTTGCTTTGAGTTTAGGAGACACGTCCAAGTCCTTTGCTTCCAACAAGGACCCACCCGGGTTCTGCTTAGCACCGAGAAGAAGCGACGCTGCAACTGAGAGAAGAGGTTCTTCAGATCCACCGGTTCAACTCGACCTTCTTCCTTTCGCTCCGGTTCTCAGACCCCACCAACCTCCCTCTCACCTTCGTATCCCTTGGCTCACCGAACCATGTGGTGGGGCGGCCAGGGTGCTTGACGTGAATCTTTTTCCAACGGCGACAGCGGAGGACGGCGACGACGGCGGCACGTCGCTGTCGTCGTCGCCGAACAGCGCGGTATCGCCGTTCCAGATGGATTTCTGCACCAGGAACGGCAATGCGGCGGAGTTCGGAGGCGGCGGAAACAGGCTGAGAGAGCAGCAGCACGATCAGGGCGAGGGTAGAGCCACCAGTGATGACGAGGAAAATGGCTCCACCAGGAAGAAACTCAGACTCTCCAAGGAGCAATCAGCTTTTCTTGAAGAAAGTTTCAAAGAACACACCACTCTCAATCCTAAGCAGAAACTTGCTTTGGCAAAACAGTTGAATCTCCGTCCTCGTCAAGTGGAGGTTTGGTTCCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGACTGTGAGTATCTGAAGAGATGCTGTGAGACCCTAACAGAAGAGAACAGAAGATTGCAGAAGGAGCTTCAAGAACTCAGAGCCCTAAAAACTTCTCAACCATTCTATATGCAGCTTCCAGCCACAACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACCACCACAACTAACCAAACTTCCACGGTTAACAACAACAATGTTTCTTCTCAAATCCCAGTGGAGTTGTCTCTCAGCAAGCCCAGTACATTGCCCTTCCCCAATGGCCAGGCCCAGGCCCAAGCCCAAGCCCATCAAATAGCCTCTTCATGA 969 0.5232 MELALSLGDTSKSFASNKDPPGFCLAPRRSDAATERRGSSDPPVQLDLLPFAPVLRPHQPPSHLRIPWLTEPCGGAARVLDVNLFPTATAEDGDDGGTSLSSSPNSAVSPFQMDFCTRNGNAAEFGGGGNRLREQQHDQGEGRATSDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTTNQTSTVNNNNVSSQIPVELSLSKPSTLPFPNGQAQAQAQAHQIASS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1480 322 Pfam Homeodomain 155 209 IPR001356 GO:0003677
Aed8g1480 322 SMART halz 211 254 IPR003106 GO:0006355|GO:0043565
Aed8g1480 322 MobiDBLite consensus disorder prediction 298 322 - -
Aed8g1480 322 ProSiteProfiles 'Homeobox' domain profile. 151 211 IPR001356 GO:0003677
Aed8g1480 322 PANTHER - 30 314 - -
Aed8g1480 322 MobiDBLite consensus disorder prediction 1 45 - -
Aed8g1480 322 Gene3D - 159 209 - -
Aed8g1480 322 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 30 314 - -
Aed8g1480 322 SMART HOX_1 153 215 IPR001356 GO:0003677
Aed8g1480 322 MobiDBLite consensus disorder prediction 119 160 - -
Aed8g1480 322 MobiDBLite consensus disorder prediction 134 160 - -
Aed8g1480 322 ProSitePatterns 'Homeobox' domain signature. 186 209 IPR017970 GO:0000981|GO:0006355
Aed8g1480 322 Coils Coil 217 247 - -
Aed8g1480 322 CDD homeodomain 155 212 IPR001356 GO:0003677
Aed8g1480 322 Pfam Homeobox associated leucine zipper 211 245 IPR003106 GO:0006355|GO:0043565
Aed8g1480 322 SUPERFAMILY Homeodomain-like 146 212 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1480 Aed-Chr8 19821212 19824215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1480 43 274 Homeobox Transcription Factor Family AT5G47370 56.540 7.02e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed8g1480 Homeodomain 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1480 K09338 - gmx:100776113 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1480 8 19821212 19824215 Aed8g1480 8 19821212 19824215 ECH
Aed4g0361 4 2629503 2630618 Aed8g1480 8 19821212 19824215 PCT