Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1465 ATGACAGATGGTGAGGATATCCAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTGGGTCGTCCACGCCACACTGGTGTGATGGTTGGAATGGGGCAAAAAGATGCATATGTTGGTGATGAGGCTCAATCCAAGAGGGGTATTTTGACACTGAAATACCCAATTGAGCATGGCATAGTTAACAACTGGGATGACATGGAGAAGATTTGGCATCACACATTCTACAATGAGCTACGTGTGGCCCCAGAAGAGCACCCTGTTCTCCTCACAGAAGCACCACTAAATCCAAAGGCCAATCGTGAGAAAATGACACAGATCATGTTTGAGACCTTCAACACTCCAGCTATGTATGTTGCCATCCAAGCGGTGCTTTCCCTTTATGCTAGTGGCCGTACAACTGTTCCAATCTATGAAGGCTATGCACTTCCACACGCAATCCTCCGTTTGGATCTTGCAGGACGTGACCTCACCGACGCCCTCATGAAGATCTTAACCGAACGTGGCTACTCATTCACCACAACTGCAGAGAGAGAAATCGTGAGAGATGTCAAAGAAAAACTGGCCTACATTACACTTGACTACGAGCAGGAGCTGGAAACATCAAAGACAAGCTCGGCCATCGAGAAGAGCTACGAGCTACCCGATGGACAGGTGATCACGATTGGCGCGGAACGGTTCCGTTGCCCCGAGGTGCTCTTCCAGCCATCCATGATTGGGATGGAGGCCTCTGGCATCCATGAAACAACATACAACTCCATCATGAAGTGTGATGTTGACATAAGGAAGGACCTCTATGGTAACATTGTGTTGAGTGGTGGAACAACAATGTTCCCTGGGATTGCTGATAGGATGAGCAAGGAGATCACAGCATTGGCACCAAGTAGCATGAAGATTAAGGTGGTGGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGGTACTACAACACCACTCTTGGTTTTCGTTACATGTCAATCAAATTTTTTAG 1080 0.4796 MTDGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYITLDYEQELETSKTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEASGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVLQHHSWFSLHVNQIF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1465 359 Gene3D Actin; Chain A, domain 4 169 260 - -
Aed8g1465 359 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Aed8g1465 359 Gene3D - 140 327 - -
Aed8g1465 359 PRINTS Actin signature 225 241 IPR004000 -
Aed8g1465 359 PRINTS Actin signature 51 62 IPR004000 -
Aed8g1465 359 PRINTS Actin signature 117 130 IPR004000 -
Aed8g1465 359 PRINTS Actin signature 28 37 IPR004000 -
Aed8g1465 359 PRINTS Actin signature 63 85 IPR004000 -
Aed8g1465 359 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Aed8g1465 359 CDD NBD_sugar-kinase_HSP70_actin 10 150 - -
Aed8g1465 359 SUPERFAMILY Actin-like ATPase domain 5 148 IPR043129 -
Aed8g1465 359 SUPERFAMILY Actin-like ATPase domain 150 344 IPR043129 -
Aed8g1465 359 Pfam Actin 5 344 IPR004000 -
Aed8g1465 359 PANTHER ACTIN 1 345 IPR004000 -
Aed8g1465 359 SMART actin_3 7 357 IPR004000 -
Aed8g1465 359 Gene3D - 10 345 - -
Aed8g1465 359 PANTHER ACTIN-4 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1465 Aed-Chr8 19612716 19616087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1465 1 344 Miscellaneous Gene Families AT3G53750 92.157 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1465 K10355 - tcc:18590701 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1465 8 19612716 19616087 Aed8g1465 8 19612716 19616087 ECH
Aed4g0370 4 2686575 2690102 Aed8g1465 8 19612716 19616087 PCT