Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1456 ATGGACGCTCGCAAGCGCGGAAGACCCGACGGCAACCTTAACGGCGCCGTTAAAAAAACCAAGCAAGAATTGGAGTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTTGGTGAGGGCTGCCACTTCTTGCATTACGTTCCCGGTGGCTATAATGCTGTTGCCCATATGATGAATTTAAAACCCGCTGCTCCTCCAACGAGAACTGTTGCCGCACCACCACCATCGGTCCCTAATGGTTCTGCTCAATCTTCTGTCAAAACCCGCATATGTAACAAATTCAATTCTGCTGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGAGAATGGGAACTTGGCAAATCTATTGCTCCATCAATGGATAATCATCATCATCAACATCATCAGCATCATCATCATCAACATCAACGTCCTATGGGACCTCCATCAGGTGGTCGTATGTCTGGTCGAATTGAGCCTCCCCCCGCTTTGACTGGTAGCTTTGGCCTCATTTCTACTGCCAAGATCAGTGTAGAAGCCTCCCTGGCTGGAGCCATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACCGGAGCGAAACTCTCGATTCGAGAGCATGAATCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGAACAGATTAAGGAAGCAAGTAGCATGGTAAAAGATTTACTCTTGACTGTTTCAATGTCTGCCCCACCAAAATCCACACCAGGTGCTCCTGGTGCACCTGCCCCACCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGAGAGATGTCATTTTGCACATGGAGCTTCTGAAATGCGCAAGACAGGAGTATGA 921 0.4756 MDARKRGRPDGNLNGAVKKTKQELESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPTRTVAAPPPSVPNGSAQSSVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKSIAPSMDNHHHQHHQHHHHQHQRPMGPPSGGRMSGRIEPPPALTGSFGLISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASSMVKDLLLTVSMSAPPKSTPGAPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGASEMRKTGV 306
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1456 306 MobiDBLite consensus disorder prediction 1 30 - -
Aed8g1456 306 CDD KH-I 181 244 - -
Aed8g1456 306 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 297 IPR000571 GO:0046872
Aed8g1456 306 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 99 124 IPR000571 GO:0046872
Aed8g1456 306 Gene3D - 272 304 - -
Aed8g1456 306 Gene3D - 92 129 - -
Aed8g1456 306 ProSiteProfiles Type-1 KH domain profile. 179 243 - -
Aed8g1456 306 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 176 249 IPR036612 GO:0003723
Aed8g1456 306 SUPERFAMILY CCCH zinc finger 272 302 IPR036855 GO:0046872
Aed8g1456 306 SUPERFAMILY CCCH zinc finger 97 127 IPR036855 GO:0046872
Aed8g1456 306 SUPERFAMILY CCCH zinc finger 33 58 IPR036855 GO:0046872
Aed8g1456 306 MobiDBLite consensus disorder prediction 134 172 - -
Aed8g1456 306 Pfam KH domain 182 244 IPR004088 GO:0003723
Aed8g1456 306 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 305 - -
Aed8g1456 306 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Aed8g1456 306 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Aed8g1456 306 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Aed8g1456 306 Pfam RNA-binding, Nab2-type zinc finger 37 57 - -
Aed8g1456 306 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 305 - -
Aed8g1456 306 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Aed8g1456 306 ProSiteProfiles Zinc finger C3H1-type profile. 32 60 IPR000571 GO:0046872
Aed8g1456 306 SMART kh_6 178 248 IPR004087 GO:0003676
Aed8g1456 306 ProSiteProfiles Zinc finger C3H1-type profile. 272 299 IPR000571 GO:0046872
Aed8g1456 306 Gene3D K Homology domain, type 1 179 271 IPR036612 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed8g1456 Aed-Chr8 19462992 19468437 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed8g1456 KH_1 6.8e-12 CL0007
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1456 - - gmx:100817463 514.227
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g1456 8 19462992 19468437 Aed8g1456 8 19462992 19468437 ECH
Aed4g0378 4 2719716 2724598 Aed8g1456 8 19462992 19468437 PCT