Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed8g1456 | ATGGACGCTCGCAAGCGCGGAAGACCCGACGGCAACCTTAACGGCGCCGTTAAAAAAACCAAGCAAGAATTGGAGTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTTGGTGAGGGCTGCCACTTCTTGCATTACGTTCCCGGTGGCTATAATGCTGTTGCCCATATGATGAATTTAAAACCCGCTGCTCCTCCAACGAGAACTGTTGCCGCACCACCACCATCGGTCCCTAATGGTTCTGCTCAATCTTCTGTCAAAACCCGCATATGTAACAAATTCAATTCTGCTGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGAGAATGGGAACTTGGCAAATCTATTGCTCCATCAATGGATAATCATCATCATCAACATCATCAGCATCATCATCATCAACATCAACGTCCTATGGGACCTCCATCAGGTGGTCGTATGTCTGGTCGAATTGAGCCTCCCCCCGCTTTGACTGGTAGCTTTGGCCTCATTTCTACTGCCAAGATCAGTGTAGAAGCCTCCCTGGCTGGAGCCATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACCGGAGCGAAACTCTCGATTCGAGAGCATGAATCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGAACAGATTAAGGAAGCAAGTAGCATGGTAAAAGATTTACTCTTGACTGTTTCAATGTCTGCCCCACCAAAATCCACACCAGGTGCTCCTGGTGCACCTGCCCCACCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGAGAGATGTCATTTTGCACATGGAGCTTCTGAAATGCGCAAGACAGGAGTATGA | 921 | 0.4756 | MDARKRGRPDGNLNGAVKKTKQELESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPTRTVAAPPPSVPNGSAQSSVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKSIAPSMDNHHHQHHQHHHHQHQRPMGPPSGGRMSGRIEPPPALTGSFGLISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASSMVKDLLLTVSMSAPPKSTPGAPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGASEMRKTGV | 306 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed8g1456 | 306 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Aed8g1456 | 306 | CDD | KH-I | 181 | 244 | - | - | |
Aed8g1456 | 306 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 273 | 297 | IPR000571 | GO:0046872 | |
Aed8g1456 | 306 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 99 | 124 | IPR000571 | GO:0046872 | |
Aed8g1456 | 306 | Gene3D | - | 272 | 304 | - | - | |
Aed8g1456 | 306 | Gene3D | - | 92 | 129 | - | - | |
Aed8g1456 | 306 | ProSiteProfiles | Type-1 KH domain profile. | 179 | 243 | - | - | |
Aed8g1456 | 306 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 176 | 249 | IPR036612 | GO:0003723 | |
Aed8g1456 | 306 | SUPERFAMILY | CCCH zinc finger | 272 | 302 | IPR036855 | GO:0046872 | |
Aed8g1456 | 306 | SUPERFAMILY | CCCH zinc finger | 97 | 127 | IPR036855 | GO:0046872 | |
Aed8g1456 | 306 | SUPERFAMILY | CCCH zinc finger | 33 | 58 | IPR036855 | GO:0046872 | |
Aed8g1456 | 306 | MobiDBLite | consensus disorder prediction | 134 | 172 | - | - | |
Aed8g1456 | 306 | Pfam | KH domain | 182 | 244 | IPR004088 | GO:0003723 | |
Aed8g1456 | 306 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 8 | 305 | - | - | |
Aed8g1456 | 306 | SMART | c3hfinal6 | 97 | 124 | IPR000571 | GO:0046872 | |
Aed8g1456 | 306 | SMART | c3hfinal6 | 32 | 59 | IPR000571 | GO:0046872 | |
Aed8g1456 | 306 | SMART | c3hfinal6 | 272 | 298 | IPR000571 | GO:0046872 | |
Aed8g1456 | 306 | Pfam | RNA-binding, Nab2-type zinc finger | 37 | 57 | - | - | |
Aed8g1456 | 306 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 8 | 305 | - | - | |
Aed8g1456 | 306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 97 | 125 | IPR000571 | GO:0046872 | |
Aed8g1456 | 306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 32 | 60 | IPR000571 | GO:0046872 | |
Aed8g1456 | 306 | SMART | kh_6 | 178 | 248 | IPR004087 | GO:0003676 | |
Aed8g1456 | 306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 272 | 299 | IPR000571 | GO:0046872 | |
Aed8g1456 | 306 | Gene3D | K Homology domain, type 1 | 179 | 271 | IPR036612 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed8g1456 | Aed-Chr8 | 19462992 | 19468437 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Aed8g1456 | KH_1 | 6.8e-12 | CL0007 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed8g1456 | - | - | gmx:100817463 | 514.227 |