Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1455 ATGGCGTCCAAAGGAGGTCCCAGGTCGAGGATTGACCACGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGACGGCCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTCTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAAAAAGTAGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGTTTAAGAAAGGTTGCACTTAGTATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTCCTATTAGGACAAACTGAGAGGTACTCAACAATGTTGGCAGAAAATCTTGTGGATCCTTATAAATCAGCAGAGAATAACTCTGCAGGGCACCACTTGAGTATTCAATGCAAAGATGTACATGAAGATGTTGTTAATGAACCTAAGGAAGCTGATATTGTGGAGTGTCAATCAGATGCAGCTGAAAATGATGAAGAATATGATGTACAAACTGAAGATGAGTCGGAGGATGATGAACGAACAATTGAGCAAGACGAGGCTCTTATAACTAAAGAAGAAAGGCGAGAGGAATTGGCCGCTTTGCGTAATGAAATGGATCTTCCGATTGAGGAGTTACTTAAACGTTATGCTGGGGAGAAAGGAGAATCTGTAATGAAGGAAAATAGTCCAGAGCATAGTGAAGATGGTGGGAAAATAGTTAGAGCTGGTGATGGTAAGAAAGAATTAGCATCAGAAAACGGAGATGATCTTTTACCTGTCAGCAAAATTGACACAAGCAATTCCAGCATGGTCTCCGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACCAACAAACAATCTATCTCAATGTGAGGATGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACAGCCAATGAAGATTTTGCATATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGATAAGGATGATGAAACAACCTTATCTGATGAGGAAAAACTGGAAAGAGTGGATGCAATCGATCCCAAGGAGGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGATATAACAGGGACCCAAGCGACGATGAAGATGGGGAATGTGAATCTGATTATGCTTCTGCTTTATCAGAGGACCATTCAGATTCTCCAGTCCACGAGGATGCTGGGCCGAAGGATCCTGCCATTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTGCCGCACAGTCCAAGGAAGAAGAACAGTGTGAATCACCTCAGGAAAATTTGGACAAAAAAGAAAGTGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCCACTGGAAACACCTTCTCCACAACTAATGTGCGCACAAAGTTCCCTTTTCTACTGAAGTACTCTCTTCGTGAGTATCAACATATTGGGTTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGATAAAGGGATTTGGGGCCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCTAACTCCTTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGGATTCTCTTGACTGGTACACCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGTGATGGTTGAGGGAGAAGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGACTTAAGCGAGATGTGGAGAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTGTCAAAGAGGCAGCGTAATTTGTATGAAGATTTCATTGCTAGTTCAGAGACCCAAGCCACTCTTGCAAGTTCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGATCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCCATGCTTTTGCCTAGTCCCTTTTCAATGGTGGACCTAAGAGGTTTGGGTCTCTTATTCACTCATCTTGACTATAGCATGGCTGCTTGGGAAAGTGATGAAGTACAAACTATTGAGACCCCTGCGACTTTAATCATGGAATGTATTGATATGGCTGAGCTAGAGGTGATTAGGCCACTGAAATGTCAAAAAAAGTTGCAAGGAACCAACATTTTTGAAGAGATCCAACGGGCAATCTGGGAAGAGAGGCTAAAACAGGCCAAGGAACGAGTAGCGGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCCATCTACTCAACAACTCTAAGGGATCTTGTTACCTTAAGACACCCTGTATATGATATTCATCAGGCAAAAGCAAACCCTGTTTCATACTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCAGAAGATGACTGATGTGGTTGAAAGCTTCATGTTTTCAATTCCAGCTGCACGGGCACCCTCTCCTGTATGCTGGTGCAGTACAAATGAGACAAATGTGTTTCTGCACCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTTACCGCTACTGTCACCAATCAGGCCTGCAATTGTCCGCCGGCAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTAGCAATTTTGTTGAGGAAATTAAAATCGGAAGGTCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTTATTAGTTTGTATGGGTATACATACATGCGGTTAGATGGATCAACCCAGCCGGAGGATAGACAGACCTTAATGCAGCGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGCAGTGGGGGTGTTGGTATCAATCTTGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATGCCAAAGGAGAAAAACCATAACAATGGGGAAGTTTCTGTAACTAATGCAGATGTTGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTACTTGGCATTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAATCAGGAGTTTACAGAGGAAGCTGTTGGGAGACTTGAAGAGGATGAATATGTAAATGAGGATGATGAGACTGCAGAATTAGGTGAATCTGTTTCAAATTTAAATAAAGAGAATGTGTTAATGTTAAATGGAAGTGATCATAAGGAAGATAGACCGCCACACTCTGTTGCTGTCAACAAAGAAGATGATCCTGACATGCTGGCTGATGTCGAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAGAATGAGCTACGCCCTATTGATCGATATGCCATTCGTTTTCTGGAACTGTGGGATCCAATCATAGATAAAACAGCCTTGGAATCTGAAGTTAGGATTGAGGACACGGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCCCTTGTATATGAAAGCTGGGATGCTGATGTTGCAACTATAGCATATCGACAGCAAGTAGAGGCCTTGGCGCAACATCAGTTAATGGAGGAACTTGAGTATGAAGCTAGACAGAAAGAAGCTGAGGAACAAACTTGTGATTCTAAAAGGACTCAAACACCAGGGGATTCAAAGCCCAAATCTAAAAAGAAACCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACCTCTGGCTTGAGACCTGTGAAAGAAGAGTCACAAGCAGAGCCTATGAACATAGATGATGAGGATGTCACCGGTCTAGATTTTCTGTCTCCAAATTCAACCATGCAGAAAAAACGGAAGAAGTCTAAATTAACAACTGATGTTGAAGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCTTCCGATTTAGAATCCAACTCATTAGTTGTCCAGGATGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCAAGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAAAGGGTCTGGATGATTAAACCAGAAAAATTGAAAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGAAACGCTTTATGGCATGACAGCTGGTGGGTCATACAGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAACTATTCCAAAAGTATGTCTTGTTGTCAATGGACAATGCAAATCATGAGAAGATCAACAGTCCGGGCTCTGGAAAGGCACTTCTTAAAGTTACAGAGGATAATATTCGGATGCTGCTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTACTGCTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGTCTGGAAGGTGGCATCACGTGTTGACCGCAGGCAAAATCCATCAACCACCTGTAATGGTCTCTATTTCGATCAGAGTTTCTATACTTCCATTGGCCAGCCTTCACAAAATTCCTTGAAGAAATCCTCTGAAAGGATGGCATTTGCGAATTTGGCCCAGAGCAAGAAGTTAGTAGCAGCTGCACTTGATGATATCACAACTAGGCAAGTGAATGACAAAGTCATTCTCTCTAACCAAGAGGAAGACATGCCAGTAACTGCAGATCAGCTGGATATAACTCTGGAGTTCCCGAAGGAGGATAGTGACATTCTATCTTCATTTCCATCTGTTATAAATTTATCAATAGATGGGACTGAACCAACCCCATCTTTAAGTAAGCAAACAGGAGAAGATGATCTTAAAGTTGGCTTGGAGGCTGCAAGAGTTTGTGAAGAAGACAGCTCTGGATGGGCATCATCTGCATTCCCAACCAATGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAGCAGAAGTCTTCCGTAGCCGACTCTTCCAAGCCTTCTAGGTCAAAGTCCAAAAAAGCTTCAATGGATCCTAGTGAAATGCATCACCATCAGGCTGACTCAATATTCCAGTCAATGCCATCACTTATGGATCTGAGAATTGATCTCACTTCATTAGCTACGAATGAAGCTGGAATTGATGCTATGGATAGCATTTTATCCTCTGACTTGAATGGGGAAAGTTCATTGGAAATGGAGAGTGTTGGAATCATCCCGCATGATTATGTTGCTGGTTTAATCTCAGACCTTGATGACTGTACAGCATTCCCTGAATATACTGACATTAGATAA 6138 0.4143 MASKGGPRSRIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALSISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDPYKSAENNSAGHHLSIQCKDVHEDVVNEPKEADIVECQSDAAENDEEYDVQTEDESEDDERTIEQDEALITKEERREELAALRNEMDLPIEELLKRYAGEKGESVMKENSPEHSEDGGKIVRAGDGKKELASENGDDLLPVSKIDTSNSSMVSGRRCDESNGDVATPTNNLSQCEDGQSENLKEVPSETANEDFAYDFTDEEEDGDFLLGTEDKDDETTLSDEEKLERVDAIDPKEEIALLQKESDMPVEELLARYNRDPSDDEDGECESDYASALSEDHSDSPVHEDAGPKDPAIPMDEDIKSGEHLAAAQSKEEEQCESPQENLDKKESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISVMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASSNFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSVCSMLLPSPFSMVDLRGLGLLFTHLDYSMAAWESDEVQTIETPATLIMECIDMAELEVIRPLKCQKKLQGTNIFEEIQRAIWEERLKQAKERVAAIAWWNSLRCKKRPIYSTTLRDLVTLRHPVYDIHQAKANPVSYLYSSKLADIVLSPVERFQKMTDVVESFMFSIPAARAPSPVCWCSTNETNVFLHPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFISLYGYTYMRLDGSTQPEDRQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNHNNGEVSVTNADVEAALKCVEDEADYLALKKVELEEAVDNQEFTEEAVGRLEEDEYVNEDDETAELGESVSNLNKENVLMLNGSDHKEDRPPHSVAVNKEDDPDMLADVEQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADVATIAYRQQVEALAQHQLMEELEYEARQKEAEEQTCDSKRTQTPGDSKPKSKKKPKKAKFKSLKKGSLTSGLRPVKEESQAEPMNIDDEDVTGLDFLSPNSTMQKKRKKSKLTTDVEEEKRLKKSKKSKRDPPDIYASDLESNSLVVQDEHAESKTCESLVDLEQKTASRSKMGGKISITPMPVKRVWMIKPEKLKKGNHWSKDCIPSADFWLPQEDAILCAVVHEYGPNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELFQKYVLLSMDNANHEKINSPGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASRVDRRQNPSTTCNGLYFDQSFYTSIGQPSQNSLKKSSERMAFANLAQSKKLVAAALDDITTRQVNDKVILSNQEEDMPVTADQLDITLEFPKEDSDILSSFPSVINLSIDGTEPTPSLSKQTGEDDLKVGLEAARVCEEDSSGWASSAFPTNDARSRPGSRIQSSGKQKSSVADSSKPSRSKSKKASMDPSEMHHHQADSIFQSMPSLMDLRIDLTSLATNEAGIDAMDSILSSDLNGESSLEMESVGIIPHDYVAGLISDLDDCTAFPEYTDIR 2045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1455 2045 PANTHER HELICASE SRCAP 9 1956 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 1914 1947 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 253 286 - -
Aed8g1455 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Aed8g1455 2045 SMART helicmild6 1091 1174 IPR001650 -
Aed8g1455 2045 CDD DEXQc_SRCAP 521 743 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 190 216 - -
Aed8g1455 2045 Gene3D - 1026 1293 IPR027417 -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 1547 1575 - -
Aed8g1455 2045 ProSiteProfiles HSA domain profile. 23 95 IPR014012 -
Aed8g1455 2045 Gene3D - 1647 1708 - -
Aed8g1455 2045 Pfam SNF2-related domain 538 810 IPR000330 GO:0005524|GO:0140658
Aed8g1455 2045 MobiDBLite consensus disorder prediction 425 481 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 293 337 - -
Aed8g1455 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 1241 IPR027417 -
Aed8g1455 2045 Coils Coil 1278 1298 - -
Aed8g1455 2045 Coils Coil 1403 1423 - -
Aed8g1455 2045 Pfam Helicase conserved C-terminal domain 1064 1174 IPR001650 -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 1468 1582 - -
Aed8g1455 2045 ProSiteProfiles Myb-like domain profile. 1651 1704 IPR001005 -
Aed8g1455 2045 Coils Coil 217 237 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 1468 1488 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 190 224 - -
Aed8g1455 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 533 698 IPR014001 -
Aed8g1455 2045 SMART bromneu2 24 95 IPR014012 -
Aed8g1455 2045 CDD SF2_C_SNF 1050 1185 - -
Aed8g1455 2045 Gene3D - 767 832 - -
Aed8g1455 2045 PANTHER HELICASE SRCAP-RELATED 9 1956 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 1912 1967 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 1948 1966 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 346 372 - -
Aed8g1455 2045 SMART ultradead3 517 710 IPR014001 -
Aed8g1455 2045 Gene3D - 490 766 IPR038718 -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 373 414 - -
Aed8g1455 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 743 IPR027417 -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 7 34 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 253 481 - -
Aed8g1455 2045 MobiDBLite consensus disorder prediction 1 34 - -
Aed8g1455 2045 Pfam HSA domain 28 94 IPR014012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1455 Aed-Chr8 19442998 19461676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1455 541 813 RAD5 or RAD16-like Gene Family AT5G43530 29.814 7.74e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed8g1455 SNF2_N 6.6e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1455 - - gmx:100794898 3700.98